MXO02739.5prime Sequence
426 bp (426 high quality bases) assembled on 2007-04-13
> MXO02739.5prime
CAGTCGACATGAAGAACTTTGCTCTCTGTCTGCTGGCCACCGCCTTGATG
AGCTGCTGCCAGGCTGCCCCCCAAAAGGCGGAGGAGCCCATCGCCATCAT
CAGCCAGGAGTCCAACATTGAGCCAGATGGATCCTACAACTATGCCTATG
AGACGGCCAATGGAATCAAAGCTGAGGAGACCGGAACCCTGAAGAAGGCC
ACTTCGCCAGACTCCAGTGACGTGATCATCGCCAGGGGATCGGTGTCGTA
CACCTCGCCCGAGGGTAACCTGATCACACTGAACTACTCCGCCGATGATG
AGAACGGTTTCCAGCCGCAGGGCGATCATCTGCCCACTCCGCCACCAATC
CCGCCAGCGATCCAGAAGGCCCTTGACTACCTGCTCAGCCTGCCACCGGC
AAAGCGTCGTGCAAGCTTTCTAGACC
MXO02739.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8505-PA | 405 | CG8505-RA | 1..402 | 9..410 | 2010 | 100 | Plus |
CG32405-PA | 336 | CG32405-RA | 289..327 | 297..335 | 170 | 97.4 | Plus |
CG30045-PA | 993 | CG30045-RA | 751..812 | 309..370 | 160 | 90.3 | Plus |
CG12330-PA | 720 | CG12330-RA | 547..590 | 303..346 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cpr49Ae-RA | 1186 | CG8505-RA | 107..508 | 9..410 | 2010 | 100 | Plus |
Cpr49Aa-RB | 584 | CG30045-RB | 364..434 | 300..370 | 235 | 88.7 | Plus |
Cpr65Av-RA | 642 | CG32405-RA | 402..440 | 297..335 | 180 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12404166..12404430 | 146..410 | 1325 | 100 | Plus |
2R | 25286936 | 2R | 12403381..12403508 | 18..145 | 640 | 100 | Plus |
2R | 25286936 | 2R | 12377158..12377228 | 300..370 | 235 | 88.7 | Plus |
3L | 28110227 | 3L | 6139425..6139463 | 335..297 | 180 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:25:46 has no hits.
MXO02739.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:02 Download gff for
MXO02739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8505-PA | 1..405 | 9..411 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:26 Download gff for
MXO02739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 9..410 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:04 Download gff for
MXO02739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cpr49Ae-RA | 107..508 | 9..410 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:04 Download gff for
MXO02739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12403381..12403508 | 14..145 | 96 | -> | Plus |
2R | 12404166..12404430 | 146..410 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:26 Download gff for
MXO02739.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8290886..8291013 | 14..145 | 96 | -> | Plus |
arm_2R | 8291671..8291935 | 146..410 | 100 | | Plus |