MXO02744.5prime Sequence
703 bp (607 high quality bases) assembled on 2007-04-13
> MXO02744.5prime
CAATCGACATGAGTCACAAAATCCCCGCTGTGTGCCTCTTGATGAGCTGC
CTGATTGCCACGGCTTATAGTGCCGCTAAGGTGCCAATTTCTATCTACTA
CTAGTCCCTGTGCCCGGACAGCGCCAAGTTCATTACGGACCAGGTATATC
CGGCGGTGAAGGGAGAACTGCGCGATGTGGTGGAACTCACTTTCGTGCCA
TTCGGAAAGTCTCAGTTCGTTACCCAGGGCTCCGAAGTGACGTTCACCTG
CCACCACGGACCGAACGAGTGCTATGGCAATAAGGTGCATGCCTGCGCCA
TCGAGCACATTCAGGCCAACTCCTATCAGGTGGAGTACACGCGTCGAGTC
GCTCACGATGGACTTCATCAACTGTCTAATGAAGGCCGGCAAGAATTTCC
CGGACAACGTCTATCCCGGCCAGCGATGCGCCTCGGAGAACCACATCAAT
AACTGGGAGAACATCAAGACCTGTGCCAACTCCACCGAGGGAAGCGTTCT
GCTCCGGAAGGCCGGCGAAAGCACCATGCGGATCAAGGAGCCACTCACCA
GCGTGCCCACCATTCTGTTCAATGAGCAATTCGACAAGAAGGTGAATGAT
CGCGCCCAGATGAACTTGGTGGGCACCATCTGCCAATACATATCCGCCCC
GCAGCCGCGCATCTGCAACCAGAACAACGGAGCATCGACTCCATCTTTGG
CCA
MXO02744.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9796-PA | 753 | CG9796-RA | 1..694 | 9..703 | 3235 | 98.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GILT1-RA | 1122 | CG9796-RA | 113..806 | 9..703 | 3330 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13399073..13399435 | 576..213 | 1740 | 99.2 | Minus |
| 3R | 32079331 | 3R | 13399510..13399646 | 215..79 | 655 | 98.5 | Minus |
| 3R | 32079331 | 3R | 13398842..13398970 | 703..575 | 600 | 97.7 | Minus |
| 3R | 32079331 | 3R | 13401676..13401750 | 83..9 | 360 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:40 has no hits.
MXO02744.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:05 Download gff for
MXO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9796-PA | 1..693 | 9..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:26 Download gff for
MXO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9796-RA | 113..805 | 9..702 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:02 Download gff for
MXO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GILT1-RA | 113..805 | 9..702 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:02 Download gff for
MXO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13398843..13398968 | 577..702 | 97 | <- | Minus |
| 3R | 13399073..13399432 | 216..576 | 99 | <- | Minus |
| 3R | 13399510..13399644 | 81..215 | 98 | <- | Minus |
| 3R | 13401679..13401750 | 9..80 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:26 Download gff for
MXO02744.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9224565..9224690 | 577..702 | 97 | <- | Minus |
| arm_3R | 9224795..9225154 | 216..576 | 99 | <- | Minus |
| arm_3R | 9225232..9225366 | 81..215 | 98 | <- | Minus |
| arm_3R | 9227401..9227472 | 9..80 | 98 | | Minus |
