MXO02747.5prime Sequence
884 bp (756 high quality bases) assembled on 2007-04-13
> MXO02747.5prime
CAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAAACTTATTG
ATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAGGTGTACGT
AACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCGCAAGAGCT
GCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCTCCGAGCTT
ATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTAACGGACAA
GGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAAGTGCGTGG
CAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGTGCAGGAAA
CGTGGAATTCGAGTGGGCTTCATTTCGGACGTCCTAACGGATGCCACGGC
AGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACTATTCGAGG
CCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCCCCATGTGG
ATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTGGGCTTCGG
CCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAAGCCGACGG
AGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGGCTGCTGTG
AATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCGGACTTAAT
CGTAGTCTGTTGCGCCCTAGCCCCGGAGACTAAGGAAATCTTCAATGCCA
CTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACACGGCGCGT
GGTGGCGTTGTAGACCAAAAGGCCCTGTACGATGCACTGAAAACCAAACG
AATTCTAGCAGCTGGCCTGGATGTAACGACGCCG
MXO02747.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1236-PA | 1044 | CG1236-RA | 368..876 | 376..884 | 2445 | 99.2 | Plus |
| CG1236-PA | 1044 | CG1236-RA | 1..364 | 9..372 | 1820 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:35:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1236-RA | 1190 | CG1236-RA | 42..917 | 9..884 | 4275 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:35:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5737003..5737740 | 147..884 | 3585 | 99.1 | Plus |
| 3R | 32079331 | 3R | 5736789..5736928 | 9..148 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:35:27 has no hits.
MXO02747.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:07 Download gff for
MXO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1236-PA | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:38:16 Download gff for
MXO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1236-RA | 36..917 | 1..884 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:16 Download gff for
MXO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1236-RA | 36..917 | 1..884 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:16 Download gff for
MXO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5736783..5736928 | 1..148 | 97 | -> | Plus |
| 3R | 5737005..5737740 | 149..884 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:38:16 Download gff for
MXO02747.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1562505..1562650 | 1..148 | 97 | -> | Plus |
| arm_3R | 1562727..1563462 | 149..884 | 99 | | Plus |
