MXO02749.5prime Sequence
854 bp (754 high quality bases) assembled on 2007-04-13
> MXO02749.5prime
CAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGACCGGCAAA
CAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACATTAGATGA
AAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAATGTGGAGG
CCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCCATCTAAAC
GGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGCAACTATAA
GCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGACATACGCC
TGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGCAGCTGCTT
GACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCCAGGAAATT
CGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCTAATAAATG
ATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCCCGGGGCAG
GGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTGGAGGACGA
CGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACTCTGCCTGT
CTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCCTGAAGCAG
GCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAGCTGATCCT
GGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCTATCGGAAC
AAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATCATTTCACC
GAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAACTTATGGG
CATA
MXO02749.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1239-PA | 903 | CG1239-RA | 1..846 | 9..854 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1239-RC | 1052 | CG1239-RC | 114..959 | 9..854 | 4230 | 100 | Plus |
| CG1239-RB | 1058 | CG1239-RB | 120..965 | 9..854 | 4230 | 100 | Plus |
| CG1239-RA | 1051 | CG1239-RA | 113..958 | 9..854 | 4230 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5733695..5734433 | 9..747 | 3695 | 100 | Plus |
| 3R | 32079331 | 3R | 5734501..5734609 | 746..854 | 545 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:29:16 has no hits.
MXO02749.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:07 Download gff for
MXO02749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-PA | 1..845 | 9..853 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:42 Download gff for
MXO02749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 109..957 | 1..853 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:28 Download gff for
MXO02749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 109..957 | 1..853 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:28 Download gff for
MXO02749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5733691..5734432 | 1..746 | 99 | -> | Plus |
| 3R | 5734502..5734608 | 747..853 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:42 Download gff for
MXO02749.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1559413..1560154 | 1..746 | 99 | -> | Plus |
| arm_3R | 1560224..1560330 | 747..853 | 100 | | Plus |
