MXO02756.5prime Sequence
891 bp (781 high quality bases) assembled on 2007-04-13
> MXO02756.5prime
CAGTCGACATGTCGGCCAGAAGAGCAACCCATGCAGGCAGCTGGTACACG
GACTCGGGCGCCGAGCTCTCGAGACAGTTGGATCGTTGGCTGGGTGCCGC
AGATTTGTCCCATGGACCGGCTCGTGCCATCATTGCTCCACATGCTGGAT
ATACGTACTGTGGAGCCTGCGCTGCCTTTGCCTATCGCCAAGTTAGCCCA
GTTGTCGTCAAGCGAATCTTCATACTGGGTCCCTCGCATCATGTGCGTCT
GCGTGGCTGCGCCTTATCCGTGGCGAAGAAGTACAGGACACCCCTCTATG
ATCTCAAAATTGATGCTCAGATCAACTCTGAGCTTGAGAAGACTGGAAAG
TTTTCTTGGATGGACATGAAGACTGACGAGGATGAACACTCCATCGAGAT
GCATTTACCCTACATTGCCAAAGTGATGGAGGACTACAAGGATCAGTTCA
CCATTGTGCCTATTCTGGTGGGTTCGCTCAATCCCGAACAGGAGGCGCAG
TACGGCAGCCTGCTGTCCTCGTATCTGATGGACCCCACCAATCTGTTTGT
GATATCNTTCCGACTTTTGCCACTGGGGCCATCGCTTCAGCTATACCTAC
TATGACAGCTCCTGCGGAGCGATTCACAAGTCCATCGAGAAGCTGGACAA
GCAGGGCATGGACATCATTGAGTCGCTCAATCCGCACTCCTTCACCGAGT
ACTTGCGCAAGTACAACAATACGATATGCGGACGCCATCCCATCGGAGTA
ATGCTAGGCGCCGTGAAGGCACTGCAGGATCAGGGCTACGAACAGATGAG
TTTCAAGTTCCTCAAGTACGCCCAGAGCAGCCAGTGTCAGGACATTGAGG
ACTCCAGCGTTAGCTACGCCTCCGGATCGCTCGTCTTCGAG
MXO02756.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8031-PA | 888 | CG8031-RA | 1..882 | 9..891 | 4325 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8031-RA | 1318 | CG8031-RA | 131..1012 | 9..891 | 4360 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13008690..13009146 | 891..434 | 2210 | 99.3 | Minus |
| 3R | 32079331 | 3R | 13009382..13009494 | 321..209 | 565 | 100 | Minus |
| 3R | 32079331 | 3R | 13009204..13009315 | 433..322 | 560 | 100 | Minus |
| 3R | 32079331 | 3R | 13009689..13009771 | 139..57 | 415 | 100 | Minus |
| 3R | 32079331 | 3R | 13009559..13009627 | 208..140 | 345 | 100 | Minus |
| 3R | 32079331 | 3R | 13011131..13011180 | 58..9 | 250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:23:12 has no hits.
MXO02756.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:10 Download gff for
MXO02756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-PA | 1..882 | 9..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:47 Download gff for
MXO02756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 125..1012 | 1..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:59 Download gff for
MXO02756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8031-RA | 125..1012 | 1..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:59 Download gff for
MXO02756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13008690..13009146 | 434..891 | 99 | <- | Minus |
| 3R | 13009204..13009315 | 322..433 | 100 | <- | Minus |
| 3R | 13009382..13009494 | 209..321 | 100 | <- | Minus |
| 3R | 13009559..13009627 | 140..208 | 100 | <- | Minus |
| 3R | 13009689..13009770 | 58..139 | 100 | <- | Minus |
| 3R | 13011132..13011186 | 1..57 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:47 Download gff for
MXO02756.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8834412..8834868 | 434..891 | 99 | <- | Minus |
| arm_3R | 8834926..8835037 | 322..433 | 100 | <- | Minus |
| arm_3R | 8835104..8835216 | 209..321 | 100 | <- | Minus |
| arm_3R | 8835281..8835349 | 140..208 | 100 | <- | Minus |
| arm_3R | 8835411..8835492 | 58..139 | 100 | <- | Minus |
| arm_3R | 8836854..8836908 | 1..57 | 92 | | Minus |
