MXO02758.5prime Sequence
887 bp (836 high quality bases) assembled on 2007-04-13
> MXO02758.5prime
CAGTCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCCTGCTTTTG
GTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGATAGCACCAC
CACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCTACCCGGCA
TAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACAAGATCAAC
TGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCACGGGAAGT
GACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTCCACGCCCA
AAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGGAGTGCCCC
ACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCTCGCCCACT
TTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGTTGAGGATC
CCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACTTCAAAACG
CAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTCCATGACTA
TGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGAGTACGTGC
GCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTAAGTTGCCC
AACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGTGAAGCCTT
GCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTCCTCCGACT
CGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAATTCCGGCGG
CTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTGGCCGCCGA
TCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAG
MXO02758.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-PA | 951 | CG9021-RA | 1..879 | 9..887 | 4370 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:46:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-RB | 1382 | CG9021-RB | 29..907 | 9..887 | 4380 | 99.9 | Plus |
| CG9021-RA | 1201 | CG9021-RA | 29..907 | 9..887 | 4380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:46:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5903653..5904463 | 887..77 | 4040 | 99.9 | Minus |
| 2L | 23513712 | 2L | 5904589..5904661 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:46:57 has no hits.
MXO02758.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:11 Download gff for
MXO02758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-PA | 1..879 | 9..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:25 Download gff for
MXO02758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 10..892 | 1..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:03 Download gff for
MXO02758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 25..907 | 1..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:03 Download gff for
MXO02758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5903653..5904459 | 81..887 | 99 | <- | Minus |
| 2L | 5904590..5904665 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:25 Download gff for
MXO02758.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5903653..5904459 | 81..887 | 99 | <- | Minus |
| arm_2L | 5904590..5904665 | 1..80 | 95 | | Minus |
