MXO02767.5prime Sequence
884 bp (835 high quality bases) assembled on 2007-04-13
> MXO02767.5prime
CAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTCTAGCCGCT
TCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAGAACGGCTG
GTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACATGGATGTCG
CTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTGGCTTGACC
ACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCCTCGAGCAG
CAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAACTTCAACC
CTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGAGCTACTTG
AACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAGGGAGACTA
CAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGATTATGCCA
CCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCAAGATGATT
AACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTATATGTGAT
TGGTCACAGCTTGGGGCGCCCATGTGGCTGGATATGCCGGCAAGAACACC
GACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTCTT
CAGCTACAACAAGCCCAACAAACGTCTGAATTCCGACGATGCCTGGTATG
TGGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAAGCCCATC
GGCAAGGGAGCTTTCTATCCCAACGGAGGAAAGACCCAGCCCGGCTGCCC
TCTGGATGTGACTGGAGCCTGCTCCCACGGACGCTCAACAACTACTACGC
CGAGGCCGTCTCCGAGGACAACTTCGGAACCATG
MXO02767.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:27:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6271-PA | 1026 | CG6271-RA | 1..876 | 9..884 | 4280 | 99.6 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 538..785 | 546..794 | 1080 | 97.5 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 385..522 | 393..530 | 490 | 94.2 | Plus |
| CG6295-PA | 1017 | CG6295-RA | 682..776 | 700..794 | 300 | 92.6 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 800..876 | 809..884 | 295 | 96.1 | Plus |
| CG6283-PA | 1020 | CG6283-RA | 688..779 | 703..794 | 235 | 90.2 | Plus |
| CG6295-PA | 1017 | CG6295-RA | 584..639 | 602..657 | 230 | 96.4 | Plus |
| CG6283-PA | 1020 | CG6283-RA | 373..425 | 390..442 | 190 | 94.3 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 59..105 | 67..113 | 160 | 93.6 | Plus |
| CG17191-PA | 1014 | CG17191-RA | 367..400 | 390..423 | 145 | 97 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 1..48 | 9..56 | 140 | 91.6 | Plus |
| CG6283-PA | 1020 | CG6283-RA | 828..860 | 842..874 | 140 | 96.9 | Plus |
| CG6277-PA | 1026 | CG6277-RA | 313..339 | 321..347 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6271-RA | 1072 | CG6271-RA | 22..897 | 9..884 | 4320 | 99.7 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 31..906 | 9..884 | 2640 | 86.9 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 319..894 | 311..883 | 875 | 77.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27025143..27025979 | 884..48 | 4075 | 99.6 | Minus |
| 3R | 32079331 | 3R | 27022250..27023067 | 884..67 | 2465 | 87.3 | Minus |
| 3R | 32079331 | 3R | 27020427..27021002 | 883..311 | 800 | 77.1 | Minus |
| 3R | 32079331 | 3R | 27006107..27006439 | 875..546 | 680 | 82.3 | Minus |
| 3R | 32079331 | 3R | 27017480..27017623 | 768..625 | 225 | 77.1 | Minus |
| 3R | 32079331 | 3R | 27026049..27026088 | 48..9 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 27019251..27019307 | 446..390 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:00 has no hits.
MXO02767.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:14 Download gff for
MXO02767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6271-PA | 1..876 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:21 Download gff for
MXO02767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6271-RA | 22..897 | 9..884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:56 Download gff for
MXO02767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6271-RA | 22..897 | 9..884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:56 Download gff for
MXO02767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27025143..27025978 | 49..884 | 99 | <- | Minus |
| 3R | 27026049..27026088 | 9..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:21 Download gff for
MXO02767.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22850865..22851700 | 49..884 | 99 | <- | Minus |
| arm_3R | 22851771..22851810 | 9..48 | 100 | | Minus |
