MXO02778.5prime Sequence
910 bp (786 high quality bases) assembled on 2007-04-13
> MXO02778.5prime
CAGTCGACATGTCGTACAAGGTGGAACCATTGCCCGATTCCTACGCCGGC
CTGGGCGAGGGTCCCCATTGGGATGTGGCCAGGCAAAGCCTGTACTACGT
GGATTTGGAGGCGGGCAGCCTGCTCCGCTACGACTATGCCCAGAACAAGG
TCTACAAGACGAAGATCGAGGGCGAAACCTTGGCCGGATTCGTGCTGCCG
GTGGAGGGACGTCCGCAGGAGTTCGCCGTCGGCTGCGGTCGACGCGTGGT
GATCGTCAACTGGGATGGCGTCTCGCCCAGCGCCAAGGTGGTGCGCACAC
TGTTCGAGGTGCAGCCACTGATGGAGAAGAATCGTTTGAACGACGCCAAG
GTTGATCCCCGTGGTCTCTTCTTTGGCGGCACCATGCGCTACATTGGCGA
TGAGTTCGAGTTCCGTCACGGCGAGCTGTACCGCTGGGAGGCCGGTGGCC
AGGTGTCGGTGATCAAGGGCGATGTGGGCATCTCCAATGGACTGGCATGG
GACGAGAAGGCCAAGAAGTTCTACTACATCGATACCACCGACTACGAGGT
GAAGTCGTATGACTATGATTTCGAGACCGGCGTGGCTAGCAATCCCAAGG
TTATATTCAATCTGCGCAAGAACAGTCCCAAGGATCATCTGCTGCCCGAT
GGCCTGACCATCGATACCGAGGGCAACCTGTATGTGGCCACCTTCAATGG
CGCCACCATCTACAAGGTTAATCCCAACACTGGCAAGATTCTGCTTGAGA
TCAAGTTCCCAACCAAACAGATTACCTCCGCCGCCTTCGGTGGCCCCCAC
TTGGACATCCTGTACGTGACCACTGCCGCCAAGTTCGATCAGCCCGCTCA
AGCTGGCACCCCCTACAAGGTGACCGGACTGACCGCCACCGGCTATCCCC
GCGTCAACCT
MXO02778.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:28:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1803-PA | 912 | regucalcin-RA | 1..902 | 9..910 | 4210 | 98.6 | Plus |
| CG1803-PC | 912 | regucalcin-RC | 1..902 | 9..910 | 4210 | 98.6 | Plus |
| CG1803-PB | 912 | regucalcin-RB | 1..902 | 9..910 | 4210 | 98.6 | Plus |
| CG1803-PD | 960 | regucalcin-RD | 49..950 | 9..910 | 4210 | 98.6 | Plus |
| CG7390-PA | 912 | smp-30-RA | 25..68 | 33..76 | 145 | 93.1 | Plus |
| CG7390-PB | 912 | smp-30-RB | 25..68 | 33..76 | 145 | 93.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| regucalcin-RD | 1083 | CG1803-RD | 85..986 | 9..910 | 4330 | 98.7 | Plus |
| regucalcin-RB | 1458 | CG1803-RB | 143..1044 | 9..910 | 4330 | 98.7 | Plus |
| regucalcin-RC | 1097 | CG1803-RC | 99..1000 | 9..910 | 4330 | 98.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 12016003..12016721 | 9..727 | 3490 | 99 | Plus |
| X | 23542271 | X | 12016779..12016961 | 728..910 | 840 | 97.3 | Plus |
| 3R | 32079331 | 3R | 14746410..14747125 | 724..9 | 430 | 70.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:12 has no hits.
MXO02778.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:18 Download gff for
MXO02778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1803-PD | 49..950 | 9..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:11 Download gff for
MXO02778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| regucalcin-RC | 99..1000 | 9..910 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:05 Download gff for
MXO02778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| regucalcin-RC | 99..1000 | 9..910 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:05 Download gff for
MXO02778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 12015997..12016721 | 1..727 | 98 | -> | Plus |
| X | 12016779..12016961 | 728..910 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:11 Download gff for
MXO02778.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11910030..11910754 | 1..727 | 98 | -> | Plus |
| arm_X | 11910812..11910994 | 728..910 | 97 | | Plus |
