Clone MXO02780 Report

Search the DGRC for MXO02780

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:27
Well:80
Vector:pMK33-CTAP-BD
Associated Gene/Transcript4EHP-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02780.5prime Sequence

693 bp (693 high quality bases) assembled on 2007-04-13

> MXO02780.5prime
CAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACGAGACGAAA
AACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGATAATCAGAT
AGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGAGAACCGGC
TGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGCAGCGGGCG
GCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGCGCCAGCGT
GCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCACCGCCCTGA
AGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATACCGATGTGG
GAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGACTGCGCAA
GAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGATGCTCGGGG
AGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTACAGACGAAA
TATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACTGATATGAC
CAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAATATACCTC
TAACAACGGCATTGGAGTATAAGATACACTGTGATAGCCTTAAATATGTT
TCAATTAATAAAGGCCCATTGAAAAGCGCAAGCTTTCTAGACC

MXO02780.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG33100-PA 672 4EHP-RA 1..669 9..677 3270 99.5 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
4EHP-RA 1855 CG33100-RA 454..1122 9..677 3300 99.6 Plus
4EHP-RD 1324 CG33100-RD 454..1100 9..655 3190 99.5 Plus
4EHP-RC 4539 CG33100-RC 454..951 9..506 2445 99.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 24106824..24107284 507..47 2260 99.3 Minus
3R 32079331 3R 24064182..24064331 655..506 750 100 Minus
3R 32079331 3R 24108469..24108507 47..9 195 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:08:24 has no hits.

MXO02780.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:18 Download gff for MXO02780.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33100-PA 1..672 9..680 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:39 Download gff for MXO02780.5prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 450..1129 1..685 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:31 Download gff for MXO02780.5prime
Subject Subject Range Query Range Percent Splice Strand
4EHP-RA 450..1129 1..685 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:31 Download gff for MXO02780.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 24064182..24064330 507..655 100 <- Minus
3R 24106825..24107284 47..506 99 <- Minus
3R 24108470..24108511 1..46 91   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:39 Download gff for MXO02780.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19889904..19890052 507..655 100 <- Minus
arm_3R 19932547..19933006 47..506 99 <- Minus
arm_3R 19934192..19934233 1..46 91   Minus