MXO02781.5prime Sequence
831 bp (755 high quality bases) assembled on 2007-04-13
> MXO02781.5prime
CAGTCGACATGACCCAGGCGGAGATCGTGAAATGTCTGCGGGAGGAGTAT
GAAATCGAACACAACAAGGATCAGAAGCCGGAGAAGGAGGACCTGCCCGC
CATCACCAAAAAGTTCTATCAGCGAGTCTTGGAACTGCTGACCATTCACA
AAGTGCCCTACTCCAAACAAGAAGATGAGGAGACCTACGAAGAGTACCTG
CTGTCGGACACGGAGGAATCGGGAAACAAGAAAAAGAAACAACAGGGAAA
ACTGAAAAACCAAGACTCCGACGACGAGGATGTAGAGGCACGCATTGCCT
CCATCAAGAACAAGCTGCGCCAGAAAAAGGGACCCACAACGGAGCGACAG
CAGAAGCGACGCGAATCTAAAAAGCTTAAACGCAGCAAGGGCGTCCAGAA
ACTGCTCCTCTCCTCGGCCAAAAACCTCAAAAACGAGAACGTCAAGCACC
AGAAACTGAAGAATGGCGTGGTGAAATCAGAACAGGAGACGGAGGACAGC
AAGGAACAGATCCAGCCGGTCAAGGTGCAACCGGTTTACAACCAGGAGGC
CAAGATCGTCTACTCCAAGGTGGACTTTGCCGCCAATCCTGGAGGCAAAG
CCAAGAAGTCTCACCAAAACCCCAAGGAGATTCTGAAGAAGCTGCGCGAC
ACCAAGAAGCACCTAACCGAACTGCGCGAACAGGGCGAAACGGACAAGGC
GGCGGAGATCCAGACGGACATCGCCTGGCGCAACGCATTCGACAAGGTCG
AGGGCAAGAAGGTCAAGGACGACACCAAGCTGCTGCAAAAGGCCATCAAG
AAGCGGCGCGGGGAGAAGAAGAAGTCCAAGA
MXO02781.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4510-PA | 975 | Surf6-RA | 1..823 | 9..831 | 4090 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 81..903 | 9..831 | 4100 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903912..19904570 | 831..173 | 3280 | 99.8 | Minus |
| 3R | 32079331 | 3R | 19904619..19904788 | 178..9 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:19:28 has no hits.
MXO02781.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:19 Download gff for
MXO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4510-PA | 1..822 | 9..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:15 Download gff for
MXO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 71..901 | 1..830 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:11 Download gff for
MXO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..902 | 1..830 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:11 Download gff for
MXO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19903913..19904568 | 175..830 | 99 | <- | Minus |
| 3R | 19904623..19904795 | 1..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:15 Download gff for
MXO02781.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729635..15730290 | 175..830 | 99 | <- | Minus |
| arm_3R | 15730345..15730517 | 1..174 | 97 | | Minus |
