MXO02787.5prime Sequence
579 bp (579 high quality bases) assembled on 2007-04-13
> MXO02787.5prime
CAGTCGACATGGCTGATCGTCCCTGTGCTGGAAACATTCTCCGCATCGCC
GGGGCCGTGATTCTGCCCAATCTGGGCGGCATCTATAACGGGCGGCTGAC
CAGGCAGCATCTCCAGAGCTGGTACGCCAACCTTAAGTTCCCGTCCTTCA
AGCCGCCCAACTCGGTCTTTGCGCCGATGTGGATCTCCTTGTACGCGGGA
ATGGGCTACGGCTCCTACCTGGTGTGGCGTGATGGCGGAGGCTTCGCCGG
CGAGGCGGCCAAACTGCCCCTGATCGCGTACGGCACCCAGCTGGCCTTGA
ACTGGGCGTGGACGCCCATTTTCTTCGGGCAGCACAACATCAAGGGCGGC
CTTATTGACATAGTTGCACTCACGGCCGCCGCGTCCGCCTGCGGCGTTCT
GTTCTACCGAGTGAACAAGACCGCTGGATTGCTCTTCGTACCCTACGTCG
CCTGGCTGGGATTCGCGACGGCTCTGAACTACGCCATCTGGAAGCTGAAC
CCGGAGAAGGAGCAGGCGCCCAAGGACGAGGAGAAGCCCTCTAGCAGCCA
CGCTAAGTCGAGTGCAAGCTTTCTAGACC
MXO02787.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2789-PA | 558 | CG2789-RA | 1..555 | 9..563 | 2750 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2789-RA | 853 | CG2789-RA | 88..642 | 9..563 | 2760 | 99.8 | Plus |
| rempA-RC | 5308 | CG11838-RC | 273..612 | 348..9 | 1685 | 99.7 | Minus |
| rempA-RC | 5308 | CG11838-RC | 1..214 | 561..348 | 1070 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 559699..560038 | 9..348 | 1685 | 99.7 | Plus |
| 2L | 23513712 | 2L | 560097..560312 | 348..563 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:09 has no hits.
MXO02787.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:21 Download gff for
MXO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2789-PA | 1..558 | 9..567 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:44:05 Download gff for
MXO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2789-RA | 88..647 | 9..569 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:28 Download gff for
MXO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2789-RA | 88..647 | 9..569 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:28 Download gff for
MXO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 559699..560037 | 9..347 | 99 | -> | Plus |
| 2L | 560097..560317 | 348..569 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:44:05 Download gff for
MXO02787.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 559699..560037 | 9..347 | 99 | -> | Plus |
| arm_2L | 560097..560317 | 348..569 | 99 | | Plus |
