MXO02788.5prime Sequence
808 bp (633 high quality bases) assembled on 2007-04-13
> MXO02788.5prime
CAGTCGACATGCGAAAGTTGACTAGCTTCGTGTGCGGCACAGGAGCCGGA
CTGGCGGCTTACTACCTACAGCGGCTGCGGGACCCGCAGACGGTCGTGCA
GAACTCGTGGACGCACAGTGATAAGCCGGTGGATCCGTGGGCCCTTTGGG
ACACCAACTGGGATTGCCGGGAGCCACGGGCCCTCGTGCGTCCACTGCGA
AACAGCCAGCCGGAGGAGGAGAACCGCTACAACGCGGAGCTTGAGAAGGC
GAAGGCCAAGAAGGCGCGCCACATTATCCTAGTGCGGCATGGCGAGTATC
TGGACGTGGGTGACTCGGATGACACGCATCATCTCACGGAGCGCGGCCGC
GAGCAGGCGGAGTTTACTGGTATTCGGCTCTGCGAGCTGGGCATCAAGTG
GGACAAGGTAGTAGCCTCCACAATGGTGCGGGCCCAGAAGACTTCCGATA
TTATTCTCAAGCAGATCGATTTCGAAAAAGAGAAAGTGGTGAACTGTGCC
TTCCTGCGTGAAGGAGCGCCTATTCCGCCCCAGCCGCCAGTCGGCCACTG
GAAGCCGGAGGCATCTCAGTTCCTTCGCGACGGATCGCGCATAGAGGCCG
GCTTTCGCCGATACTTCCACCGCGCCTATCCCGACCAAGAGAAGGAGAGC
TATACCCTGATCGTGGGACACGGCAACGTGATCCGCTACTTTGTCTGCCG
AGCCCTGCAATTCCCCGCCGAGGGTTGGCTACGGATTAACATTAATCACG
CTTCCATCACCTGGCTGACCATCAGTCCATCCGGCAACGTGTCCATCAAG
TACCTGGG
MXO02788.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14816-PA | 870 | CG14816-RA | 367..800 | 375..808 | 2120 | 99.5 | Plus |
| CG14816-PA | 870 | CG14816-RA | 1..362 | 9..370 | 1785 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pgam5-RA | 1100 | CG14816-RA | 36..835 | 9..808 | 3910 | 99.2 | Plus |
| Pgam5-RB | 1097 | CG14816-RB | 36..832 | 9..808 | 3855 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1872973..1873530 | 566..9 | 2715 | 99.1 | Minus |
| X | 23542271 | X | 1872665..1872906 | 808..567 | 1195 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:42 has no hits.
MXO02788.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:21 Download gff for
MXO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14816-PA | 1..800 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:04:58 Download gff for
MXO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgam5-RA | 36..835 | 9..808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:38 Download gff for
MXO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pgam5-RA | 36..835 | 9..808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:38 Download gff for
MXO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1872665..1872906 | 567..808 | 99 | <- | Minus |
| X | 1872973..1873530 | 9..566 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:04:58 Download gff for
MXO02788.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1766698..1766939 | 567..808 | 99 | <- | Minus |
| arm_X | 1767006..1767563 | 9..566 | 99 | | Minus |
