MXO02792.5prime Sequence
849 bp (752 high quality bases) assembled on 2007-04-13
> MXO02792.5prime
CAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCCTGAGTCTG
GGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACCGAGTTGAT
TCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAACAAAAACA
ATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGATACGTGCC
CAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAA
CCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCA
GGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATGACGAAATC
CTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAGCTTTCCGA
CGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGG
ACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTC
TATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATAT
TGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGG
GAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTAC
AAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGA
GAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTG
CCGTAAACGAATTTTTGGGCCCACTGCAAAGTTATTTTGCAGCTGAAAAC
ATAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTAT
MXO02792.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:30:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11790-PA | 909 | CG11790-RA | 1..841 | 9..849 | 4205 | 100 | Plus |
| CG11790-PB | 738 | CG11790-RB | 1..670 | 180..849 | 3350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11790-RA | 1010 | CG11790-RA | 81..921 | 9..849 | 4205 | 100 | Plus |
| CG11790-RC | 1040 | CG11790-RC | 81..826 | 9..754 | 3730 | 100 | Plus |
| CG11790-RB | 1116 | CG11790-RB | 320..1027 | 142..849 | 3540 | 100 | Plus |
| CG11790-RC | 1040 | CG11790-RC | 857..951 | 755..849 | 475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25048025..25048349 | 142..466 | 1625 | 100 | Plus |
| 3R | 32079331 | 3R | 25048442..25048603 | 467..628 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 25047786..25047918 | 9..141 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 25048665..25048790 | 629..754 | 630 | 100 | Plus |
| 3R | 32079331 | 3R | 25049272..25049366 | 755..849 | 475 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:42 has no hits.
MXO02792.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:23 Download gff for
MXO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-PA | 1..841 | 9..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:11 Download gff for
MXO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RA | 81..921 | 9..849 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:44 Download gff for
MXO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RA | 81..921 | 9..849 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:44 Download gff for
MXO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25048665..25048790 | 629..754 | 100 | -> | Plus |
| 3R | 25049272..25049366 | 755..849 | 100 | | Plus |
| 3R | 25048025..25048349 | 142..466 | 100 | -> | Plus |
| 3R | 25047786..25047918 | 9..141 | 100 | -> | Plus |
| 3R | 25048442..25048603 | 467..628 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:11 Download gff for
MXO02792.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20873508..20873640 | 9..141 | 100 | -> | Plus |
| arm_3R | 20873747..20874071 | 142..466 | 100 | -> | Plus |
| arm_3R | 20874164..20874325 | 467..628 | 100 | -> | Plus |
| arm_3R | 20874387..20874512 | 629..754 | 100 | -> | Plus |
| arm_3R | 20874994..20875088 | 755..849 | 100 | | Plus |
