MXO02801.5prime Sequence
675 bp (675 high quality bases) assembled on 2007-04-17
> MXO02801.5prime
CAGTCGACATGCCCGAACTGACCGACATCAAGAGCGAGGCTGCGCCCTCC
ACCTCCGCTGAGGCGAAACCCGAGGACGTCCGCGTTGAGGATGATGGCAG
TGATAGCGACTCCGATGGTGGCATGCCTGGTCTGGAGGAGGCTGTAGCGG
CCACCACACAGCTGGGTGGAGGTGCCACCGGTCTGCCCATCGACCTCGTC
TCAAAGGCCAAGCAATCGCGCGGCGAGAAAAAGGCCAGGAAGATCATGCT
GAAGCTGGGACTTAAGCAGATCCAGGGCGTCAACCGGGTGACGATCAGGA
AGTCGAAGAACATCCTGTTCGTGATCAACAACCCAGATGTGTACAAGAAC
CCCCACAGCGACACCTACATCGTGTTCTGTGAGGCCACCATCGAGGATCT
GTCGCAACAGGCCCAGGTGGCTGCCGCCGAGAAGTTCAAGGCCCCGGAGG
CTGCTGGCGCTGCAGACAGCGTGGGCGCCACCACATCGGTGGCCCCCATT
GCCGAGGAAGACGAGGAGGATGTCGATGACACCGGCGTGGATGAGAAGGA
TATCGAGCTGGTCATCACGCAGGCCAACACGACGAGGGCCAAGGCGATCA
AGGCTCTGAAGAACAACAACAATGACATCGTCAACGCCATCATGGAGCTT
ACTATGCTTGCAAGCTTTCTAGACC
MXO02801.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:31:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8759-PB | 654 | Nacalpha-RB | 1..651 | 9..659 | 3155 | 99.3 | Plus |
| CG8759-PC | 654 | Nacalpha-RC | 1..651 | 9..659 | 3155 | 99.3 | Plus |
| CG8759-PA | 654 | Nacalpha-RA | 1..651 | 9..659 | 3155 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nacalpha-RD | 832 | CG8759-RD | 10..660 | 9..659 | 3195 | 99.4 | Plus |
| Nacalpha-RA | 895 | CG8759-RA | 73..723 | 9..659 | 3195 | 99.4 | Plus |
| Nacalpha-RC | 865 | CG8759-RC | 43..693 | 9..659 | 3195 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12759865..12760515 | 659..9 | 3195 | 99.4 | Minus |
| 3R | 32079331 | 3R | 1516474..1516532 | 599..657 | 250 | 94.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:22:11 has no hits.
MXO02801.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:25 Download gff for
MXO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8759-PA | 1..654 | 9..660 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:22 Download gff for
MXO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nacalpha-RB | 202..858 | 9..665 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:27 Download gff for
MXO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nacalpha-RC | 43..699 | 9..665 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:27 Download gff for
MXO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12759859..12760524 | 1..665 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:22 Download gff for
MXO02801.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8647364..8648029 | 1..665 | 98 | | Minus |
