MXO02806.5prime Sequence
784 bp (784 high quality bases) assembled on 2007-04-17
> MXO02806.5prime
CAGTCGACATGGCGCGTGTTTTGGTTGGAGTTAAGCGTGTGATCGACTAC
GCCGTCAAGGTGCGCGTCAAGCCCGACAAGACTGGCGTGGTCACCCAGGG
CGTGAAGCACTCGATGAATCCCTTCGACGAGATCGCCGTGGAGGAGGCGG
TGAAGCTGAAGGAGAAAAAGCTGGCCGAGGAGGTGATCGCCGTCTCCGTG
GGCCCGGCCCAGTCGCAGGAGGTGATCCGCACCGCCCTGGCCATGGGCGC
CGATCGCGGCGTCCACGTAGAGATCCCGGCCGCCGAGTACGAGCTTCTGC
AGCCCATCCACGTGTCGAAGATTCTGGCCAAGTTGGCTCTTGACGAAAAA
GCCGACCTGGTCATCCTTGGCAAGCAGGCCATCGACGATGATGCCAACCA
AACGGCCCAGATGACCGCCGCCGTGCTCGACTGGCCGCAGGGCACCTTCT
GCAACAAGATCGAGAAGACAGACGCCGGTCTGACCATCACGCGTGAAATT
GATGGTGGCCTGGAGACAATCAAGACCAAGACCCCGGCTGTGCTGAGCGC
CGATCTCCGGCTNGAACACCCCTCGCTACGCCACGTTGCCGAACATCATG
AAGGCCAAGAAGAAGCCGCTGAAGAAGGTTACGGCCAAGGATCTCGGCGT
GGACACCTCGCCCCGCATCGAGGTCATCTCCGTGGAGGATCCTCCTGTGC
GCCAGGCCGGCGCCACCGTCGCCGACGTGGATGCCCTGGTGGCCAAGCTA
AAGGAGGGCGGCCACATCGCAAGCTTTCTAGACC
MXO02806.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:32:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-PA | 762 | CG7834-RA | 1..759 | 9..768 | 3760 | 99.8 | Plus |
| CG7834-PB | 762 | CG7834-RB | 1..759 | 9..768 | 3760 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-RB | 1116 | CG7834-RB | 5..763 | 9..768 | 3775 | 99.9 | Plus |
| CG7834-RA | 1021 | CG7834-RA | 44..802 | 9..768 | 3775 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29801952..29802665 | 768..54 | 3510 | 99.7 | Minus |
| 3R | 32079331 | 3R | 29802787..29802840 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:51 has no hits.
MXO02806.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:27 Download gff for
MXO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-PB | 1..762 | 9..769 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:02 Download gff for
MXO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..802 | 2..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:00:43 Download gff for
MXO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..802 | 2..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:00:43 Download gff for
MXO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29801952..29802659 | 60..768 | 99 | <- | Minus |
| 3R | 29802790..29802846 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:02 Download gff for
MXO02806.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25627674..25628381 | 60..768 | 99 | <- | Minus |
| arm_3R | 25628512..25628568 | 1..59 | 93 | | Minus |
