Clone MXO02816 Report

Search the DGRC for MXO02816

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:28
Well:16
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptRho1-RB
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02816.5prime Sequence

601 bp (601 high quality bases) assembled on 2007-04-17

> MXO02816.5prime
CAGTCGACATGACGACGATTCGCAACAAATTGGTAATTGTCGGCGACGGT
GCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGATCAGTTCCC
CGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGACATCGAGG
TGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCGGGCAGGAG
GACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGACGTCATACT
GATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATATTCCTGAAA
AATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAATCATTTTG
GTAGGAAATAAGAAAGATTTGCGAAATGTTCCCAACCCCCTTCGGGATCT
AGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCGCGCCATGG
CCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTAAGTCCAAG
GAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCGCTGCAAGT
CAAAAAGAGAGAAGAAGACCAGATGCCTTTTGCTCGCAAGCTTTCTAGAC
C

MXO02816.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG8416-PB 579 Rho1-RB 1..378 9..386 1840 99.4 Plus
CG8416-PC 579 Rho1-RC 1..378 9..386 1840 99.4 Plus
CG8416-PD 579 Rho1-RD 1..378 9..386 1840 99.4 Plus
CG8416-PE 579 Rho1-RE 1..378 9..386 1840 99.4 Plus
CG8416-PF 579 Rho1-RF 1..378 9..386 1840 99.4 Plus
CG8416-PG 579 Rho1-RG 1..378 9..386 1840 99.4 Plus
CG8416-PA 579 Rho1-RA 1..378 9..386 1840 99.4 Plus
CG8416-PB 579 Rho1-RB 383..576 391..585 935 99.4 Plus
CG8416-PC 579 Rho1-RC 383..576 391..585 935 99.4 Plus
CG8416-PD 579 Rho1-RD 383..576 391..585 935 99.4 Plus
CG8416-PE 579 Rho1-RE 383..576 391..585 935 99.4 Plus
CG8416-PF 579 Rho1-RF 383..576 391..585 935 99.4 Plus
CG8416-PG 579 Rho1-RG 383..576 391..585 935 99.4 Plus
CG8416-PA 579 Rho1-RA 383..576 391..585 935 99.4 Plus
CG2248-PA 579 Rac1-RA 164..195 178..209 160 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:02
Subject Length Description Subject Range Query Range Score Percent Strand
Rho1-RA 1288 CG8416-RA 272..847 9..585 2785 99 Plus
Rho1-RG 1977 CG8416-RG 221..796 9..585 2785 99 Plus
Rho1-RF 1971 CG8416-RF 215..790 9..585 2785 99 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16105859..16106048 395..585 905 99.5 Plus
2R 25286936 2R 16103619..16103776 9..166 775 99.4 Plus
2R 25286936 2R 16105030..16105184 162..316 775 100 Plus
2R 25286936 2R 16105715..16105798 313..396 360 95.2 Plus
Blast to na_te.dros performed on 2014-11-28 19:29:01 has no hits.

MXO02816.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:28 Download gff for MXO02816.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8416-PE 1..579 9..589 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:29 Download gff for MXO02816.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 209..793 1..589 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:10 Download gff for MXO02816.5prime
Subject Subject Range Query Range Percent Splice Strand
Rho1-RF 209..793 1..589 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:10 Download gff for MXO02816.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16103613..16103774 1..164 96 -> Plus
2R 16105033..16105182 165..314 100 -> Plus
2R 16105717..16105797 315..395 95 -> Plus
2R 16105860..16106051 396..589 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:29 Download gff for MXO02816.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 11991118..11991279 1..164 96 -> Plus
arm_2R 11992538..11992687 165..314 100 -> Plus
arm_2R 11993222..11993302 315..395 95 -> Plus
arm_2R 11993365..11993556 396..589 98   Plus