MXO02816.5prime Sequence
601 bp (601 high quality bases) assembled on 2007-04-17
> MXO02816.5prime
CAGTCGACATGACGACGATTCGCAACAAATTGGTAATTGTCGGCGACGGT
GCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGATCAGTTCCC
CGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGACATCGAGG
TGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCGGGCAGGAG
GACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGACGTCATACT
GATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATATTCCTGAAA
AATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAATCATTTTG
GTAGGAAATAAGAAAGATTTGCGAAATGTTCCCAACCCCCTTCGGGATCT
AGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCGCGCCATGG
CCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTAAGTCCAAG
GAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCGCTGCAAGT
CAAAAAGAGAGAAGAAGACCAGATGCCTTTTGCTCGCAAGCTTTCTAGAC
C
MXO02816.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8416-PB | 579 | Rho1-RB | 1..378 | 9..386 | 1840 | 99.4 | Plus |
CG8416-PC | 579 | Rho1-RC | 1..378 | 9..386 | 1840 | 99.4 | Plus |
CG8416-PD | 579 | Rho1-RD | 1..378 | 9..386 | 1840 | 99.4 | Plus |
CG8416-PE | 579 | Rho1-RE | 1..378 | 9..386 | 1840 | 99.4 | Plus |
CG8416-PF | 579 | Rho1-RF | 1..378 | 9..386 | 1840 | 99.4 | Plus |
CG8416-PG | 579 | Rho1-RG | 1..378 | 9..386 | 1840 | 99.4 | Plus |
CG8416-PA | 579 | Rho1-RA | 1..378 | 9..386 | 1840 | 99.4 | Plus |
CG8416-PB | 579 | Rho1-RB | 383..576 | 391..585 | 935 | 99.4 | Plus |
CG8416-PC | 579 | Rho1-RC | 383..576 | 391..585 | 935 | 99.4 | Plus |
CG8416-PD | 579 | Rho1-RD | 383..576 | 391..585 | 935 | 99.4 | Plus |
CG8416-PE | 579 | Rho1-RE | 383..576 | 391..585 | 935 | 99.4 | Plus |
CG8416-PF | 579 | Rho1-RF | 383..576 | 391..585 | 935 | 99.4 | Plus |
CG8416-PG | 579 | Rho1-RG | 383..576 | 391..585 | 935 | 99.4 | Plus |
CG8416-PA | 579 | Rho1-RA | 383..576 | 391..585 | 935 | 99.4 | Plus |
CG2248-PA | 579 | Rac1-RA | 164..195 | 178..209 | 160 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rho1-RA | 1288 | CG8416-RA | 272..847 | 9..585 | 2785 | 99 | Plus |
Rho1-RG | 1977 | CG8416-RG | 221..796 | 9..585 | 2785 | 99 | Plus |
Rho1-RF | 1971 | CG8416-RF | 215..790 | 9..585 | 2785 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16105859..16106048 | 395..585 | 905 | 99.5 | Plus |
2R | 25286936 | 2R | 16103619..16103776 | 9..166 | 775 | 99.4 | Plus |
2R | 25286936 | 2R | 16105030..16105184 | 162..316 | 775 | 100 | Plus |
2R | 25286936 | 2R | 16105715..16105798 | 313..396 | 360 | 95.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:01 has no hits.
MXO02816.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:28 Download gff for
MXO02816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8416-PE | 1..579 | 9..589 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:29 Download gff for
MXO02816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 209..793 | 1..589 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:10 Download gff for
MXO02816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rho1-RF | 209..793 | 1..589 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:10 Download gff for
MXO02816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16103613..16103774 | 1..164 | 96 | -> | Plus |
2R | 16105033..16105182 | 165..314 | 100 | -> | Plus |
2R | 16105717..16105797 | 315..395 | 95 | -> | Plus |
2R | 16105860..16106051 | 396..589 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:29 Download gff for
MXO02816.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 11991118..11991279 | 1..164 | 96 | -> | Plus |
arm_2R | 11992538..11992687 | 165..314 | 100 | -> | Plus |
arm_2R | 11993222..11993302 | 315..395 | 95 | -> | Plus |
arm_2R | 11993365..11993556 | 396..589 | 98 | | Plus |