MXO02817.5prime Sequence
732 bp (732 high quality bases) assembled on 2007-04-17
> MXO02817.5prime
CCCTATAGGCGAAGTTATCAGTCGACATGTTCAGCTCGATTCCCCCTTGG
TTGAAGAACTTCGGTGACAAGACCGCCAACCTCTTCAGCAAGAAGAAGGA
TGAGGCCGAGAAGCTGGCCAACGAGAAGGCTGCCGAGGCCCAGAAGCTAG
CCGAGGAGCAGGCCAAGAAGGTGGGCCAGTCCGTACAGCAGACCAAGGGC
GAGGCCGAGCAGTTGGCCGCCAGCACGGCCAAGGAAGCCGCTGCTCTGGC
CACCGCGGAGGCTCAGAAGGCTGGACAGGCGATTGACCAGGGTGTGAACC
GTGCCGCCGGAGCCGTCAACCAAGGCAAGCAGGCGGTGGACAACACGGTG
GCCCAGGCGGCGGCCGTGGCCCAGAACTCCAAGCAGGTGGCGGCCAATGT
GGCGGAGGCCTCCCAGCGAGCGGCCGCCAATGCGGTGGACCAGACCAAGA
AGGCGGCCAACGACGCCATCAACAAGAGCGTGAAGGCCGCCGAGAACGTG
GCGGACCAGAAGCTGAAGCAGGCGGAGGGCGCCATCGATGGGGCACTGAA
GCAGACCAGTCAAACGGTGGACCAGAAGCTGCAGGAGGCCAACCAGTATG
TCGACCAGAAGCGCCAGTCCGTCGAGAAGACCGTCCAGGATGCGGCCGGA
CAGGCCCAGGAGTCTGCCGGACAGCAGGCCAACGCCCTGTTGGGCAAGCT
GCATCTGGGTCAGAAGGCAAGCTTTCTAGACC
MXO02817.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-PA | 693 | CG1648-RA | 25..690 | 51..716 | 3330 | 100 | Plus |
| CG1648-PB | 699 | CG1648-RB | 31..696 | 51..716 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1648-RC | 1392 | CG1648-RC | 196..885 | 27..716 | 3375 | 99.3 | Plus |
| CG1648-RA | 1047 | CG1648-RA | 196..885 | 27..716 | 3375 | 99.3 | Plus |
| CG1648-RB | 884 | CG1648-RB | 57..722 | 51..716 | 3330 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9811481..9811969 | 716..228 | 2445 | 100 | Minus |
| 2R | 25286936 | 2R | 9812482..9812659 | 228..51 | 890 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2933..2997 | 489..553 | 109 | 63.1 | Plus |
MXO02817.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:28 Download gff for
MXO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-PB | 26..699 | 46..717 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:43 Download gff for
MXO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RA | 191..885 | 22..716 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:40 Download gff for
MXO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1648-RA | 191..885 | 22..716 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:40 Download gff for
MXO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9811481..9811968 | 229..716 | 100 | <- | Minus |
| 2R | 9812482..9812664 | 46..228 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:43 Download gff for
MXO02817.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5698986..5699473 | 229..716 | 100 | <- | Minus |
| arm_2R | 5699987..5700169 | 46..228 | 98 | <- | Minus |
