MXO02820.5prime Sequence
924 bp (801 high quality bases) assembled on 2007-04-17
> MXO02820.5prime
CAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATGTGATCGGG
GATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGCGTCTCTCG
CCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTCGGCCGGGG
ATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACGACGCCATG
AAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAAGCCGCATT
AAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCGCCTGCGCA
AACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGGACAAAAAG
CGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCACGCGGAGGT
CACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACTGAGCACCT
TTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCATACGAGAGG
GTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCAACGAAAGA
CTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGAGATCAATA
AGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCCTGCGAATG
GTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTCAAAAACGA
TCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCACTTGCCTCA
AGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGCTCTACAAC
CTGNACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTACCGCATGCT
CTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGAGATCGACA
AAATCATGAGCTTCATCATGCGCG
MXO02820.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10750-PA | 996 | CG10750-RA | 1..916 | 9..924 | 4561 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10750-RA | 1175 | CG10750-RA | 119..1034 | 9..924 | 4569 | 99.9 | Plus |
| CG10750-RB | 1175 | CG10750-RB | 119..1034 | 9..924 | 4539 | 99.7 | Plus |
| CG17564-RB | 1305 | CG17564-RB | 471..905 | 273..707 | 420 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19300548..19301002 | 122..576 | 2275 | 100 | Plus |
| 2L | 23513712 | 2L | 19301058..19301345 | 577..864 | 1429 | 99.7 | Plus |
| 2L | 23513712 | 2L | 19300373..19300486 | 9..122 | 570 | 100 | Plus |
| 2L | 23513712 | 2L | 19301398..19301459 | 863..924 | 310 | 100 | Plus |
| 2L | 23513712 | 2L | 19298996..19299291 | 568..273 | 220 | 71.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:35:12 has no hits.
MXO02820.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:29 Download gff for
MXO02820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10750-PA | 1..916 | 9..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:28 Download gff for
MXO02820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10750-RA | 119..1034 | 9..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:21 Download gff for
MXO02820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10750-RA | 119..1034 | 9..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:21 Download gff for
MXO02820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19300373..19300485 | 9..121 | 100 | -> | Plus |
| 2L | 19300548..19301002 | 122..576 | 100 | -> | Plus |
| 2L | 19301058..19301345 | 577..864 | 99 | -> | Plus |
| 2L | 19301400..19301459 | 865..924 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:28 Download gff for
MXO02820.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19300373..19300485 | 9..121 | 100 | -> | Plus |
| arm_2L | 19300548..19301002 | 122..576 | 100 | -> | Plus |
| arm_2L | 19301058..19301345 | 577..864 | 99 | -> | Plus |
| arm_2L | 19301400..19301459 | 865..924 | 100 | | Plus |
