MXO02822.5prime Sequence
859 bp (723 high quality bases) assembled on 2007-04-17
> MXO02822.5prime
CAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCCTTTGTTTG
GCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCGCCCAAACC
AACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGCCGTGAAGG
CGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACACTTGGAAC
TTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAAAGCAAGGG
TGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTCGAAGTGTG
AGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGCCGGACGAG
TTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCCACCATGGA
TGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCATTAAGGTAG
CCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGGGTGATGCG
GCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCGCTGGTCAC
GCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAACTGCCAGC
CAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTTGCGGCCCG
TATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGACCGTGCCCG
CAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGGCATGATCG
CCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCAACGGGGCG
CGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCGGGGTGCTGG
CGCTTATGC
MXO02822.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:33:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-PA | 1182 | CG1827-RA | 1..851 | 9..859 | 4230 | 99.8 | Plus |
CG1827-PB | 1011 | CG1827-RB | 1..680 | 180..859 | 3375 | 99.8 | Plus |
CG12928-PA | 837 | CG12928-RA | 1..63 | 70..8 | 315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1827-RD | 1341 | CG1827-RD | 100..951 | 8..859 | 4245 | 99.9 | Plus |
CG10474-RA | 1273 | CG10474-RA | 256..419 | 366..529 | 235 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9589314..9590053 | 120..859 | 3685 | 99.9 | Plus |
2R | 25286936 | 2R | 9589149..9589262 | 8..121 | 570 | 100 | Plus |
2R | 25286936 | 2R | 19286249..19286412 | 529..366 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:18 has no hits.
MXO02822.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:30 Download gff for
MXO02822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-PA | 1..851 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:24 Download gff for
MXO02822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 100..951 | 8..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:31 Download gff for
MXO02822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1827-RD | 100..951 | 8..859 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:31 Download gff for
MXO02822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9589149..9589262 | 8..121 | 100 | -> | Plus |
2R | 9589316..9590053 | 122..859 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:24 Download gff for
MXO02822.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5476654..5476767 | 8..121 | 100 | -> | Plus |
arm_2R | 5476821..5477558 | 122..859 | 99 | | Plus |