MXO02825.5prime Sequence
756 bp (756 high quality bases) assembled on 2007-04-17
> MXO02825.5prime
CCCCTTAAGGGAAGTTATCAGTCGAAATGATCTGGGACTTCTCCACCTGG
GGACGCGGAGCCACCGAGTTCAGTGCCACTGCGCTACTGATTTTGCTCGG
TTGCATGGGAGACTCAACGAACCAAGGTGGTGAGAGCAAATTCTTGGTGG
CCAGCGTTCACTATGGCCTGACGGTGATGGTGGTGATGCACGTGTTTGGC
TTCGTATCCGGAGCCCATTCGAATCCATGCATCTCGATCTCATGCTACTT
GATGGGCTACATCGCCCTGGAAGTGATGATGATGTACGTGGTGTGTCAGA
TGGCCGGTGCTTTCCTTGGTTACTTCCTGCTAATGCAACTGCTGCCCAAG
GAGCTGGTGGACAAAAGCAAGCCAGGCATTTGCCTGGTACAACCTATGGA
CACTCTGTCCACATACCAGGTCGTCATCATCGAGTGCCTGCTGACCGCGG
TCCTCGTGCTCGGATGGTGCTCCTTGTGGGACGTGCGAAACGGAAGGTTC
CTCGACTCGGTCGCCATTCGCATGGGTCTCCTCGTGATCGCTTGCAGTTT
CGCAGGGATTCAACTAACTGGAGCCAGTATGAACCCCGCCAAGACATTGG
TGCCTGCCATATTCTACGGCAGTCCGAATTCGGTTCTAATGCAGCTGACT
GGCCAGATCCTGGCCGCCATCATGGTGCCCTTCGTGTGGAATCATGCGTA
TACGCCACCTTATAAGCCCTTGGAAATTCCAGTGTGCAACGCAAGCTTTC
TAGACC
MXO02825.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5398-PA | 717 | CG5398-RA | 27..714 | 53..740 | 3415 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5398-RA | 938 | CG5398-RA | 133..846 | 27..740 | 3465 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23602898..23603302 | 153..557 | 2010 | 99.8 | Plus |
| 2R | 25286936 | 2R | 23603366..23603549 | 557..740 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 23602717..23602844 | 27..154 | 550 | 95.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:34 has no hits.
MXO02825.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:31 Download gff for
MXO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5398-PA | 1..717 | 27..743 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:43 Download gff for
MXO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5398-RA | 128..852 | 18..747 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:16 Download gff for
MXO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5398-RA | 128..852 | 18..747 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:16 Download gff for
MXO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23602712..23602844 | 18..154 | 92 | -> | Plus |
| 2R | 23602900..23603302 | 155..557 | 99 | -> | Plus |
| 2R | 23603367..23603555 | 558..747 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:43 Download gff for
MXO02825.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19490235..19490367 | 18..154 | 92 | -> | Plus |
| arm_2R | 19490423..19490825 | 155..557 | 99 | -> | Plus |
| arm_2R | 19490890..19491078 | 558..747 | 98 | | Plus |
