MXO02826.5prime Sequence
794 bp (793 high quality bases) assembled on 2007-04-17
> MXO02826.5prime
CAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCCAATTGCTG
TGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAGTCATCATC
CGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGTGATGGTTC
GTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCGGATGGTTC
GATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCCGCTGGCAA
AGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACACCTCGGTGC
TGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCAGCGAGCAC
AAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGCCACTACGG
CGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTTCGGCGAGG
AGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGCCGCCAATG
GAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCGCGCTACAA
GGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCTCAAGCTCA
CCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGCCCCAGATC
AAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGCCTGCGGGG
CGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTATGAGCCTCA
ACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGAGC
MXO02826.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17645-PA | 879 | Pglym87-RA | 1..786 | 9..794 | 3930 | 100 | Plus |
| CG1721-PA | 768 | Pglym78-RA | 154..186 | 273..305 | 165 | 100 | Plus |
| CG1721-PB | 768 | Pglym78-RB | 154..186 | 273..305 | 165 | 100 | Plus |
| CG1721-PC | 768 | Pglym78-RC | 154..186 | 273..305 | 165 | 100 | Plus |
| CG1721-PA | 768 | Pglym78-RA | 442..518 | 561..637 | 160 | 88.3 | Plus |
| CG1721-PB | 768 | Pglym78-RB | 442..518 | 561..637 | 160 | 88.3 | Plus |
| CG1721-PC | 768 | Pglym78-RC | 442..518 | 561..637 | 160 | 88.3 | Plus |
| CG1721-PA | 768 | Pglym78-RA | 256..315 | 375..434 | 150 | 90 | Plus |
| CG1721-PB | 768 | Pglym78-RB | 256..315 | 375..434 | 150 | 90 | Plus |
| CG1721-PC | 768 | Pglym78-RC | 256..315 | 375..434 | 150 | 90 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pglym87-RA | 1085 | CG17645-RA | 53..838 | 9..794 | 3930 | 100 | Plus |
| Pglym78-RC | 1042 | CG1721-RC | 115..781 | 126..792 | 1090 | 77.9 | Plus |
| Pglym78-RB | 1022 | CG1721-RB | 95..761 | 126..792 | 1090 | 77.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12231892..12232677 | 794..9 | 3930 | 100 | Minus |
| 3R | 32079331 | 3R | 29149011..29149498 | 225..712 | 790 | 77.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:59:53 has no hits.
MXO02826.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:31 Download gff for
MXO02826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17645-PA | 1..786 | 9..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:36 Download gff for
MXO02826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym87-RA | 53..838 | 9..794 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:24 Download gff for
MXO02826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym87-RA | 53..838 | 9..794 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:24 Download gff for
MXO02826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12231892..12232677 | 9..794 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:36 Download gff for
MXO02826.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8057614..8058399 | 9..794 | 100 | | Minus |
