MXO02827.5prime Sequence
565 bp (565 high quality bases) assembled on 2007-04-17
> MXO02827.5prime
CAGTCGACATGAAACGCCTGAGCGACGAACGTGCCAAGATCTTGTTCGAG
CACCTGTCCAAATACATTGGCACAAATGTGAAGCATTTGATTGACCGGCC
AGATGGAACATATTGCTTTCGGGAGCACAAGGATCGGGTCTACTACGTCT
CGGAGCGGATTTTGAAGCTGAGCGAGTGCTTCGGCTACAAGCAGCTGGTG
TGCGTGGGCACCTGCTTCGGCAAGTTCTCCAAGACCAACAAACTGAAGTT
CCATATCACGGCGCTCTACTACTTGGCGCCCTACGCCCAGTACAAGGTGT
GGGTGAAGCCCTCCTTCGAGCAGCAGTTTCTCTACGGCAACCACATACCC
AAAACCGGACTGGGTCGCATCACGGAGAACGCCGGCCAGTACCAGGGCGT
GGTGGTTTACTCCATGAACGACCTGCCTCTGGGCTTCGGCGTCCTGGCGC
GTTCCACAACGGACTGCAAGACCGCCGATCCCATGACCACCGTATGCTTT
CATCAGTCGGATATCGGCGAATATATTCGCGCCGAGGACACGCTCTTTGC
AAGCTTTCTAGAACC
MXO02827.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-PA | 543 | CG7006-RA | 1..540 | 9..548 | 2600 | 99.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..628 | 9..548 | 2640 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851305 | 65..548 | 2360 | 99.2 | Plus |
| 3R | 32079331 | 3R | 24850715..24850770 | 9..64 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:26:29 has no hits.
MXO02827.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:32 Download gff for
MXO02827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-PA | 1..543 | 9..549 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:49:40 Download gff for
MXO02827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 9..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:06:31 Download gff for
MXO02827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 9..548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:06:31 Download gff for
MXO02827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850715..24850770 | 9..64 | 100 | -> | Plus |
| 3R | 24850822..24851305 | 65..548 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:49:40 Download gff for
MXO02827.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676437..20676492 | 9..64 | 100 | -> | Plus |
| arm_3R | 20676544..20677027 | 65..548 | 99 | | Plus |
