Clone MXO02831 Report

Search the DGRC for MXO02831

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:28
Well:31
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptHP1c-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02831.5prime Sequence

730 bp (598 high quality bases) assembled on 2007-04-17

> MXO02831.5prime
CCCCCCCTAAAGGGACGTTATCAATCNACATGGTTAAAAACGAGCTCTAC
GGGGGGGGGGAGCGCATCATGGACAAGCGCATTACCAGCGAAGGCAAGGT
TGAGTACTACATCAAGTGGCGTGGCTACACGTCGGCGGACAACACCTGGG
AGCCCGAGGAGAACTGCGATTGCCCGAATCTCATCCAGAAATTCGAGGAG
TCGCGCGCCAAGTCCAAGAAGCGCGGCGAGAAGAAACCCAAGTGCGAAGA
GATCCAGAAGCTGCGCGGCTACGAGCGCGGCTTGGAGCTGGCCGAGATCG
TGGGCGCAACGGATGTGACGGGCGACATCAAGTATCTGGTGCGCTGGCAG
TTCTGCGACGAGTTCGACTTGGTGCCATCGGCACAGATCGTGGAGAAGGA
TCCGCAAATGCTGATTGACTATTTCCAGAAGATGGCACCTTACTCCCGTC
ACATTGCGATGCGAATGAAGGGCGTGCCGGAGGAGCTGCGTTTGGCGGCC
TCGCGCACCAGTTATCCGCACATTAGCAGTGCGCCCGTCGAAGTGCCGCC
GGAGGTGGATCAGTCCGCTGAGTTGGCTGGACATCTTGGTGGAATCGCGC
CACAGGTGGACCAGGCGCCGCAGCACCATGCACCCATGGATCTAGCCAAT
GATACCGACAATTTGGCTAGTGTTTCGTACTCGATTCCCGTGCCCGGCGT
TGGCGACATTGCCATCGATGTGCCCATGGC

MXO02831.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:34:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG6990-PA 714 HP1c-RA 30..701 59..730 3335 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:00:03
Subject Length Description Subject Range Query Range Score Percent Strand
HP1c-RA 986 CG6990-RA 98..798 30..730 3385 98.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:00:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22745717..22746417 30..730 3385 98.9 Plus
Blast to na_te.dros performed on 2014-11-28 20:00:02 has no hits.

MXO02831.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:33 Download gff for MXO02831.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6990-PA 1..701 30..730 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:48:43 Download gff for MXO02831.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 81..790 22..730 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:33:29 Download gff for MXO02831.5prime
Subject Subject Range Query Range Percent Splice Strand
HP1c-RA 89..798 22..730 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:33:29 Download gff for MXO02831.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22745708..22746417 22..730 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:48:43 Download gff for MXO02831.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18571430..18572139 22..730 98   Plus