MXO02833.5prime Sequence
860 bp (701 high quality bases) assembled on 2007-04-17
> MXO02833.5prime
CAGTCGACATGGCCAACATTGCTAACATCTTCGCTAGCCGCGCCCAGTGC
GTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGTTTCAGCAG
CTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGTGGCCGGCG
AGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGGCCCTGAAT
GCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTGCAGCAATT
CAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAGCGAGAAGG
CCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACACCTACTCG
CAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTGGCCCGCAC
CCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGGCGGTGGCT
GTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACAAGGCCAAG
TTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCCGGTGGCAC
CCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGAAATGTGCC
TCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGGGTCTGGCC
AGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTCAAGCTGGG
CGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTGCAAGGAGG
CGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGAAGTTCGAG
CGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAGGAGGGCAT
GACCGCTTTC
MXO02833.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6543-PB | 888 | CG6543-RB | 1..852 | 9..860 | 4235 | 99.8 | Plus |
| CG6543-PA | 888 | CG6543-RA | 1..852 | 9..860 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6543-RA | 1051 | CG6543-RA | 61..912 | 9..860 | 4245 | 99.9 | Plus |
| CG6543-RB | 1124 | CG6543-RB | 134..985 | 9..860 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13853180..13853905 | 831..106 | 3630 | 100 | Minus |
| 2R | 25286936 | 2R | 13854102..13854198 | 105..9 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:22:27 has no hits.
MXO02833.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:34 Download gff for
MXO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-PA | 1..852 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:28 Download gff for
MXO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RB | 125..985 | 1..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:06:34 Download gff for
MXO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RB | 125..985 | 1..860 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:06:34 Download gff for
MXO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13853086..13853115 | 831..860 | 100 | <- | Minus |
| 2R | 13853181..13853905 | 106..830 | 100 | <- | Minus |
| 2R | 13854102..13854207 | 1..105 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:28 Download gff for
MXO02833.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9740591..9740620 | 831..860 | 100 | <- | Minus |
| arm_2R | 9740686..9741410 | 106..830 | 100 | <- | Minus |
| arm_2R | 9741607..9741712 | 1..105 | 95 | | Minus |
