MXO02837.5prime Sequence
825 bp (768 high quality bases) assembled on 2007-04-17
> MXO02837.5prime
CTCCTAAGGCGACGTTATCAGTCGACATGAATTTTCTGTGGCCAGGAGGG
GGGTTTCTGATCGCAGGCATCCTGCCAACATTCGAAGGCGCCGCAGATGA
AATAGTCGATAAGGAAAACAAAACATACAAGGCCTTTCTGGCCAGTAAAC
CACCAGAGGAAACAGGACTGGAGCGCCTCAAGCAAATGTTTACAATCGAC
GAGTTTGGCAGCATATCCTCCGAGCTTAACTCGGTTTACCAGGCCGGCTT
CCTAGGATTCCTTATTGGAGCTATTTACGGCGGAGTTACACAATCGCGCG
TGGCCTACATGAATTTCATGGAGAACAACCAGGCCACAGCATTTAAATCG
CACTTTGATGCCAAGAAAAAGCTGCAAGATCAATTCACAGTCAACTTTGC
CAAAGGCGGCTTCAAATGGGGCTGGCGAGTGGGACTTTTTACCACATCCT
ACTTCGGCATCATCACTTGTATGTCGGTGTACCGTGGAAAATCCTCAATC
TACGAATACTTGGCCGCTGGTTCCATCACCGGCTCGCTTTACAAAGTGAG
TCTTGGTCTGCGGGGCATGGCGGCAGGTGGAATCATTGGAGGTTTCTTGG
GCGGCGTGGCTGGTGTGACGTCGCTGCTGCTGATGAAAGCATCAGGGACC
TCGATGGAAGAGGTTCGCTACTGGCAGTACAAATGGCGACTCGATCGCGA
CGAAAACATTCAACAGGCGTTCAAAAAACTGACAGAGGACGAAAACCCAG
AGCTTTTCAAGGCCCACGACGAGAAAACATCCGAACATGTATCGCTGGAC
ACGATCAAGGCAAGCTTTCTAGACC
MXO02837.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:35:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9852-PA | 786 | 140up-RA | 26..783 | 52..809 | 3790 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 140up-RB | 1200 | CG9852-RB | 73..855 | 27..809 | 3840 | 99.4 | Plus |
| 140up-RA | 937 | CG9852-RA | 73..855 | 27..809 | 3840 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14124508..14124862 | 809..455 | 1775 | 100 | Minus |
| 3R | 32079331 | 3R | 14125075..14125240 | 365..200 | 830 | 100 | Minus |
| 3R | 32079331 | 3R | 14125304..14125476 | 199..27 | 790 | 97.1 | Minus |
| 3R | 32079331 | 3R | 14124925..14125015 | 454..364 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:08:50 has no hits.
MXO02837.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:35 Download gff for
MXO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9852-PA | 1..786 | 27..812 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:24:48 Download gff for
MXO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 73..855 | 27..809 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:52:45 Download gff for
MXO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 140up-RA | 73..855 | 27..809 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:52:45 Download gff for
MXO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14124508..14124862 | 455..809 | 100 | <- | Minus |
| 3R | 14124925..14125013 | 366..454 | 100 | <- | Minus |
| 3R | 14125075..14125240 | 200..365 | 100 | <- | Minus |
| 3R | 14125304..14125476 | 27..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:24:48 Download gff for
MXO02837.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9950797..9950962 | 200..365 | 100 | <- | Minus |
| arm_3R | 9950647..9950735 | 366..454 | 100 | <- | Minus |
| arm_3R | 9950230..9950584 | 455..809 | 100 | <- | Minus |
| arm_3R | 9951026..9951198 | 27..199 | 97 | | Minus |
