MXO02839.5prime Sequence
848 bp (782 high quality bases) assembled on 2007-04-17
> MXO02839.5prime
CAGTCGACATGACCGATCCAAACGCCCCAAGAGGAGCCCTAAGCTTGCAG
AATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCAGAAGCAGC
CCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTTGGCAAATG
CCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAGCAGCTTTG
GTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATCGAGAGTCT
GGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCATAACGCTGG
TGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACACATTCGGAT
AGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTGGCCCAGAA
TAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTTGCCTGCAC
TTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGTGCTCCTTG
TATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATACGACGAGTT
TAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAAATCCACAA
ATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGTTAACTTCA
ATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTGTTTCCTGT
GCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAAACAAGAAA
CTACGCTTTTTGCACTTTCATCTCTTTCGCGGGAATCGGAGTAAAACTCT
CTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAAATTATTT
MXO02839.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10973-PB | 921 | CG10973-RB | 1..841 | 9..848 | 4115 | 99.6 | Plus |
| CG10973-PA | 768 | CG10973-RA | 1..688 | 162..848 | 3400 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10973-RB | 1032 | CG10973-RB | 57..897 | 9..848 | 4150 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12753676..12754218 | 669..127 | 2715 | 100 | Minus |
| 3L | 28110227 | 3L | 12753434..12753615 | 848..668 | 860 | 99.5 | Minus |
| 3L | 28110227 | 3L | 12754542..12754621 | 128..49 | 400 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:05 has no hits.
MXO02839.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:36 Download gff for
MXO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-PB | 1..841 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:22 Download gff for
MXO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 57..897 | 9..848 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:55 Download gff for
MXO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 57..897 | 9..848 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:55 Download gff for
MXO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12753434..12753613 | 670..848 | 99 | <- | Minus |
| 3L | 12753676..12754216 | 129..669 | 100 | <- | Minus |
| 3L | 12754542..12754619 | 51..128 | 100 | <- | Minus |
| 3L | 12754677..12754718 | 9..50 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:22 Download gff for
MXO02839.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12746534..12746713 | 670..848 | 99 | <- | Minus |
| arm_3L | 12746776..12747316 | 129..669 | 100 | <- | Minus |
| arm_3L | 12747642..12747719 | 51..128 | 100 | <- | Minus |
| arm_3L | 12747777..12747818 | 9..50 | 95 | | Minus |
