MXO02842.5prime Sequence
871 bp (784 high quality bases) assembled on 2007-05-15
> MXO02842.5prime
CAGTCGACATGGGACGTTTAATTCCCGAACAGGCGCTGCAGGGCCACAAG
GGGCGCATCTGGGGAGTGGCATGGCATCCTAAGGGCAACGTATTCGCCTC
GTGCGGCGAGGACAAAGCCATCCGCATTTGGTCGCTGACCGGGAACACTT
GGAGCACAAAGACCATCCTATCCGATGGCCACAAGCGCACTATTCGCGAG
ATCCGATGGTCTCCATGCGGTCAGTACTTGGCCTCGGCCAGCTTTGATGC
CACCACGGCGATCTGGTCGAAATCCTCGGGAGAATTCGAATGCAACGCAA
CATTGGAGGGTCACGAAAACGAGGTGAAGAGCGTTAGCTGGTCGCGATCC
GGCGGACTACTGGCCACCTGTTCGCGGGACAAGTCCGTGTGGATCTGGGA
GGTTGCCGGCGATGATGAGTTCGAGTGCGCCGCCGTTTTGAACCCGCACA
CACAGGACGTGAAGAGAGTGGTGTGGCATCCAACCAAGGACATTTTGGCC
TCCGCCTCGTACGACAATACCATAAAAATGTTCGCAGAGGAGCCCATAGA
CAACGACTGGGGATTGCACAGCCACTCTTACTTCACACACAAGCACGGTT
TGGGGCATTGACTTCGATGCTGATGGCGAGCGCCTGGTTTCCTGTAGCGA
TGACACCACAATAAAGATTTGGAGGGCCTACCATCCCGGAAATACAGCCG
GAGTGGCTACGCCCGACCAGCAAACCGTGTGGAAGTGCGTGTGCACAGTG
TCCGGGCAGCACTCGCGGGCTATCTACGACGTGTCCTGGTGCAAGCTTAC
AGGTCTGATAGCGACTGCCTGTGGCGACGACGGCATTCGTATCTTTAAGG
AGAGCAGCGACTCCAAGCCAG
MXO02842.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:12:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12797-PA | 1008 | CG12797-RA | 26..553 | 34..561 | 2640 | 100 | Plus |
| CG12797-PA | 1008 | CG12797-RA | 551..862 | 560..871 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ciao1-RA | 1186 | CG12797-RA | 90..951 | 9..871 | 4230 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14854098..14854959 | 871..9 | 4205 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:11:07 has no hits.
MXO02842.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:12:45 Download gff for
MXO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12797-PA | 1..862 | 9..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:58:13 Download gff for
MXO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 85..951 | 1..871 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:44:32 Download gff for
MXO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ciao1-RA | 85..951 | 1..871 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:44:32 Download gff for
MXO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14854098..14854964 | 1..871 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:58:13 Download gff for
MXO02842.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10741603..10742469 | 1..871 | 99 | | Minus |
