MXO02843.5prime Sequence
873 bp (725 high quality bases) assembled on 2007-04-17
> MXO02843.5prime
CAGTCGACATGAGCAAAACTAGCAACATCATGCGTTTGGCGCTGCTGCAG
CTCAAGGGTTCCAAGGACAAAGTGGCCAATGTCCAAAACGCCGTCACCAA
AATCGAGGCGGCGGTCAAGGAGCATAAACCCCGATTGATCACTCTGCCGG
AGTGCTTTAATGCTCCATACGGCACCAAGTACTTTCGGGAGTACTCCGAG
ACCATTCCCGATGGCTATACCTCGCAACAGCTCTCCAATTTGGCCAGGAA
GCACCAGGTGTACATCGTGGGCGGAACAATCCCTGAACTGGGCGAAAACG
ATGCCATCTACAACACCTGCACGGTTTGGTCACCCACTGGTGACCTTGTG
GCCAAGCATCGCAAGATGCATCTCTTTGACATAGATGTCAAGGGTGGCAT
TCGCTTCAAGGAGTCGGAAACGCTGTCCGCAGGCAATGATTTCACCATCA
TCAACGTAGATGGCCACAAGATTGGCATCGGCATCTGCTACGATATTCGA
TTCGAGGAGATGGCGAGGCTCTATCGCAACGCAGGCTGCGAGATGATCAT
CTATCCGGCTGCATTCAACATGACCACTGGTCCACTGCACTGGGAGCTAT
TGCAGCGATCCCGTGCCAATGACAACCAACTCTTTGTGGTCACAACATCA
CCAGCCCGTGACACAAGCGCCGAGTATGTAGCCTATGGCCATTCCATGGT
GGTGAATCCATGGGCCAAGGTGCAGCAGAGTGCCAGTGAAGGCGAGGAAA
TCGTGGTGGCCGATATAGATTTCTCCGAGGTGGAGCAGGTGCGTCAGCAG
ATTCCCGTCTTTGGGGCAAGACGTCTAGATCTGTACGCCACCGAAAGGAA
TGCCAAAAGCAGCTTTCTAGACC
MXO02843.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:36:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-PA | 852 | CG8132-RA | 1..849 | 9..857 | 4170 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8132-RA | 1069 | CG8132-RA | 73..921 | 9..857 | 4200 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9401641..9402470 | 28..857 | 4105 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:16:53 has no hits.
MXO02843.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:37 Download gff for
MXO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-PA | 1..852 | 9..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:33:55 Download gff for
MXO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 66..926 | 1..862 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:25 Download gff for
MXO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8132-RA | 66..926 | 1..862 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:25 Download gff for
MXO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9401641..9402475 | 28..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:33:55 Download gff for
MXO02843.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5227363..5228197 | 28..862 | 99 | | Plus |
