MXO02846.5prime Sequence
627 bp (627 high quality bases) assembled on 2007-04-17
> MXO02846.5prime
CTTCCTAAAGAAAGTTATCANTCGANATGANCAANGGTGGTGCCCTCGAG
GGATTGGGNGNAGNGNGTCCACCTCCACGGATCGATGGAATGGTCTCGCT
TAAGGTCGACAATCTCACCTATCGCACCACGCCGGAGGATCTGCGTCGGG
TCTTCGAGCGGTGCGGCGAGGTGGGGGACATCTACATACCCAGGGATCGC
TACACACGTGAGAGCCGCGGATTCGCATTTGTTCGCTTCTATGACAAACG
TGATGCCGAGGACGCACTGGAGGCCATGGATGGTCGCATGCTAGACGGCA
GGGAGCTCCGCGTACAGATGGCCCGCTACGGACGCCCCTCTTCGCCCACT
CGCAGCTCCAGTGGTCGTCGTGGCGGAGGAGGAGGCGGTGGTTCCGGCTG
GCGTCGCCGGTCACGTTCTCGCTCCCCAATGCGCCGTCGTTCGCGCAGTC
CGCGTCGCCGATCATACTCCCGTTCCCGCTCGCCTGGTAGCCACTCGCCG
GAACGCCGATCCAAATTTTCACGCAGTCCAGTACGCGGCGACAGCCGCAA
TGGAATCGGAAGCGGATCTGGAGGACTGGCCCCAGCCGCGTCTCGTAGTC
GCAGTCGCTCCGCAAGCTTTCTAGACC
MXO02846.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5442-PB | 588 | SC35-RB | 24..585 | 50..611 | 2659 | 98.7 | Plus |
| CG5442-PA | 339 | SC35-RA | 1..336 | 276..611 | 1630 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SC35-RD | 1880 | CG5442-RD | 127..711 | 27..611 | 2739 | 97.6 | Plus |
| SC35-RC | 1441 | CG5442-RC | 127..711 | 27..611 | 2739 | 97.6 | Plus |
| SC35-RB | 1077 | CG5442-RB | 127..711 | 27..611 | 2739 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:34:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12432348..12432732 | 611..227 | 1865 | 99 | Minus |
| 2L | 23513712 | 2L | 12433579..12433711 | 235..103 | 650 | 99.2 | Minus |
| 2L | 23513712 | 2L | 12433834..12433912 | 105..27 | 254 | 86.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:34:25 has no hits.
MXO02846.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:39 Download gff for
MXO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5442-PB | 21..588 | 47..612 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:28 Download gff for
MXO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SC35-RB | 147..711 | 47..611 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:59 Download gff for
MXO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SC35-RB | 147..711 | 47..611 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:59 Download gff for
MXO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12432348..12432723 | 236..611 | 99 | <- | Minus |
| 2L | 12433579..12433709 | 105..235 | 99 | <- | Minus |
| 2L | 12433835..12433892 | 47..104 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:28 Download gff for
MXO02846.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12432348..12432723 | 236..611 | 99 | <- | Minus |
| arm_2L | 12433579..12433709 | 105..235 | 99 | <- | Minus |
| arm_2L | 12433835..12433892 | 47..104 | 91 | | Minus |
