MXO02852.5prime Sequence
723 bp (686 high quality bases) assembled on 2007-05-15
> MXO02852.5prime
CAGTCGACATGCAGGAATTTTCAGCCCTACAAGACGCTCTTTTCGCATGT
CTCGACGATGCGAGCAAAGAGTTGCGGGGAACTGCCTTGGATCAGAGCAA
GGCCAAGGCGTTTTCCATCAATGCCCTCGATCGAGGAAACAAATCCGGAA
ACGAATCCGGACAGGTGATGAACTACCGCCAGGGTCGCAGCATTGTTACT
GGCCTCGATGCGGAGGATGGAAGACTGCGACGAATGCGCGGCAAGGAGAG
CATTTTCAAGAAGCCCGAACTCCCCATTGGACGCTGTTTGAAGCCAAGAA
AAACGCCAGATTACCAGGTAAACCCGCACAAATGGAAGAAGTACTCCCTG
TCTGATGTGGACATTTCCGAACAGAGCATCTCCGCCGCCGCCTTGTCCTT
CCTGCGACAAATGGATGCACAGCGCGAGGCTGAGGGCGTCGATAACGAAT
CTCCACCTACAGATGGCAAGATCGAGTTCAAGAGGACCAGCAAACTCAGC
CGCAAGCTCAAGAGCCTCAAACAGCAGGAGGTGGATGATGTGGAGCTGGA
TAAGCCGCAGTTAAGAGGTTCCAAGCTGGTGATGCCTGAGTATGTAATTG
GCCAAAAGCCGCATAAGCCAAAGAAATGCAAAACCAAATCGGAACAGAGC
CGTGCAGCGGGAAAACTACAACTGTCCCACTTGGCGGAGGAGGATGAGCA
GGATGATGCAAGCTTTCTAGACC
MXO02852.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:12:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6674-PA | 702 | CG6674-RA | 1..699 | 9..707 | 3395 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6674-RA | 843 | CG6674-RA | 83..781 | 9..707 | 3435 | 99.4 | Plus |
| CG6674-RB | 786 | CG6674-RB | 389..724 | 372..707 | 1665 | 99.7 | Plus |
| CG6674-RB | 786 | CG6674-RB | 83..391 | 9..317 | 1500 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9971213..9971604 | 707..316 | 1945 | 99.7 | Minus |
| 3L | 28110227 | 3L | 9971662..9971972 | 319..9 | 1510 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:22:23 has no hits.
MXO02852.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:12:55 Download gff for
MXO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6674-PA | 1..702 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:37 Download gff for
MXO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6674-RA | 76..787 | 1..715 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:42 Download gff for
MXO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6674-RA | 76..787 | 1..715 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:42 Download gff for
MXO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9971207..9971602 | 318..715 | 98 | <- | Minus |
| 3L | 9971664..9971978 | 1..317 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:37 Download gff for
MXO02852.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9964307..9964702 | 318..715 | 98 | <- | Minus |
| arm_3L | 9964764..9965078 | 1..317 | 97 | | Minus |
