MXO02853.5prime Sequence
799 bp (756 high quality bases) assembled on 2007-05-15
> MXO02853.5prime
CAGTCGACATGTCGTTTCATTTGACCACAAAAGAGCGCCTTCTGCTCCTG
ATCGACGACATTGAGATGATTGCCAAGGAGTTGATCGAGCAGGCGCACCA
GAAGATCTCCAGCACCGAATTGGTGGACCTGTTGGATTTGCTGGTGGCCA
AAGATGAGGAATTTCGCAAAATGCTGGAACTGGCGGAGGAGCAGGCGAAA
GTGGAGGAGGCGATGGACCAACTGCGCGCTAAGGTCGAGGTGCACGACCG
TGAGATCCAGAAGCTGCAAAAGTCGCTAAAGGATGCGGAGCTCATACTGT
CCACGGCCATCTTCCAAGCGCGACAGAAACTGGCCAGCATCAATCAGGCC
AACAAACGACCGGTTTCATCCGAGGAGCTCTTCACACCCCCACATCGGAT
TAGCTCCGCCAATGCGGTCAGTGCTCCGCTCACCTGGTGCATAGGTGACC
TGCGGCGTCCCTATCCCACGGACATTGAGATGCGCAACGGGCTGCTGGGT
AAATCCGAGCAGAACATCAACGGCGGAACAGTGACCCACCAGAACAGCGG
CATGCCCTCNGGAGCAGCAGCGAACGCTGTCCGGTAGCGCAGGAAGTGGG
AGTGGCAGTGGCGCCGGCGGCGAGGTGCCCAATGCCTTCCAGAACCAGTT
TAACTGGAATCTCGGAGAGCTGCACATGACCATGGGCGCCTCTGGGAACA
CAGTGGCCCTGGAGACGCGCGCCCAGGACGATGTGGAGGTCATGTCCACG
GATAGCTCAAGCTCCAGTTCCAGCGATTCGCAGGCAAGCTTTCTAGACC
MXO02853.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8609-PA | 777 | MED4-RA | 1..372 | 9..380 | 1835 | 99.7 | Plus |
| CG8609-PA | 777 | MED4-RA | 552..774 | 561..783 | 1115 | 100 | Plus |
| CG8609-PA | 777 | MED4-RA | 383..551 | 391..559 | 845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED4-RA | 941 | CG8609-RA | 84..857 | 9..783 | 3760 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7249613..7250149 | 783..246 | 2565 | 98.9 | Minus |
| 3L | 28110227 | 3L | 7250207..7250444 | 246..9 | 1175 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:37 has no hits.
MXO02853.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:05 Download gff for
MXO02853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8609-PA | 1..777 | 9..784 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:11 Download gff for
MXO02853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED4-RA | 76..857 | 1..783 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:07 Download gff for
MXO02853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED4-RA | 76..857 | 1..783 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:07 Download gff for
MXO02853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7249613..7250149 | 246..783 | 98 | <- | Minus |
| 3L | 7250208..7250451 | 1..245 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:11 Download gff for
MXO02853.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7242713..7243249 | 246..783 | 98 | <- | Minus |
| arm_3L | 7243308..7243551 | 1..245 | 97 | | Minus |
