MXO02858.5prime Sequence
898 bp (796 high quality bases) assembled on 2007-05-15
> MXO02858.5prime
CAGTCGACATGTTGCATCTGAGCAAACAACTGGTGGTCAGGGCGCCCAAG
ATCCGTCTGAATGCCAGCGCTGTGAGTGGAAGTGGTCAAAGTTCAAGTTT
CGATCAAAACAGCAACAATTACAGCCGAAAACTTGTTGGCCCTAATCTCA
ATCAATGCCACAAACGCTTGTCCAGCAGTAGTCAAAGTTCGACAGCCGGC
ACGATGAAGCGTTTGGCAGGAAAAGTAGCCGTGGTCACCGCCTCCACCGA
TGGCATTGGTTTCGCGATTGCCAAAAGGCTGGCCGAAGATGGCGCCGCAG
TGGTCATCAGCAGTCGCAAGCAAAAGAATGTGGACTCTGCTCTGGCGGAG
CTGCGCAAACTGAACTTGAATGTCCACGGTCTGAAGTGCCATGTCAGCGA
ACCCGAGGATCGCAAACAGCTCTTCGAGGAGACCATCAGCAAGTTTGGCA
AGCTTAACATTCTGGTCAGCAATGCAGCCACCAATCCTGCGGTCGGCGGT
GTCCTCGAGTGCGACGAGAAGGTGTGGGACAAGATCTTCGATGTGAACGT
GAAGAGTTCCTATCNTGCTGGCCAAGGAGGCACTGCCTCTCCTGCGCCAG
CAAAAGAACTCCAGCATCGTTTTCGTCTCCTCCATTGCTGGCTATGATGC
CTTTGAGCTACTGGGAGCCTATTCCGTCAGCAAGACCGCGCTGATTGGCT
TGACCAAGGCAGCCGCCAAGGATCTGGCGCCCGAGGGCATTCGCGTCAAC
TGCCTGGCTCCAGGAGTCATCAGGACAAAGTTCTCGAAAGCACTGTACGA
GAATGAGTCGGCGAATGAAGCGGCTTTGAGCAAAATACCCATGGGTCGTC
TGGGCACCAGCGAGGAGATGGCTGGCGTGGTCTCCTTTTTGGTCTCCG
MXO02858.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:12:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10672-PA | 954 | CG10672-RA | 1..556 | 9..564 | 2680 | 99.2 | Plus |
| CG10672-PA | 954 | CG10672-RA | 557..889 | 566..898 | 1640 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:57:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10672-RA | 1082 | CG10672-RA | 97..985 | 9..898 | 4350 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5140840..5141243 | 657..253 | 1915 | 98.8 | Minus |
| 3L | 28110227 | 3L | 5141306..5141550 | 253..9 | 1225 | 100 | Minus |
| 3L | 28110227 | 3L | 5140537..5140779 | 898..656 | 1200 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:57:31 has no hits.
MXO02858.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:01 Download gff for
MXO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10672-PA | 1..889 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:47:10 Download gff for
MXO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10672-RA | 97..985 | 9..898 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:12 Download gff for
MXO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10672-RA | 97..985 | 9..898 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:12 Download gff for
MXO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5140537..5140777 | 658..898 | 99 | <- | Minus |
| 3L | 5140840..5141242 | 254..657 | 98 | <- | Minus |
| 3L | 5141306..5141550 | 9..253 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:47:10 Download gff for
MXO02858.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5134406..5134650 | 9..253 | 100 | | Minus |
| arm_3L | 5133637..5133877 | 658..898 | 99 | <- | Minus |
| arm_3L | 5133940..5134342 | 254..657 | 98 | <- | Minus |
