Clone MXO02859 Report

Search the DGRC for MXO02859

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:28
Well:59
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG31988-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02859.5prime Sequence

558 bp (558 high quality bases) assembled on 2007-05-15

> MXO02859.5prime
CAGTCGACATGACTGAGAGCATTGCGTGTCACAAGTGCCAGGAGGCCATC
ACCAAGCGTATGATCACCGCCCTGGGCAAGACGTGGCACCCGGAGCACTT
CCTGTGCCACCACTGCGATGAGCAGATCCTGGATGCCACCTTCAATGTTC
AGAGCGGAGAACCAGTGTGCAACAAGTGCTTCGTGGAGCGGTACACCTAC
ACCTGTGCCGGCTGCAAGAAGCCGATCCTTGAAAAAACCATCTGCGCCAT
GGGGGAGAGCTGGCACGAAGATTGCTTTTGCTGCGGCGGTGCCTGCAAAA
AGCCGCTCGCCAATCAAACGTTCTATGAGCGCGACGGCAAGCCCTATTGC
AAAAAGGATTACGAGGACCTCTTTGCTGTTTGGTGCGCCCAGTGCGAGAA
GCCTATAACGGACTCAGCGGTGCTCGCCATGAACGTGAAGTGGCATCGCG
ATTGCTTCCGGTGCAACAAGTGCGAGAATCCTATAACCTCGCAGACTTTC
ACCATCGACGGGGACAAGCCCGTGTGCCCCGCCTGCAATTGCGCAAGCTT
TCTAGACC

MXO02859.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-PA 537 CG31988-RA 1..370 9..378 1825 99.7 Plus
CG31624-PA 537 CG31624-RA 1..370 9..378 1675 98.1 Plus
CG31988-PA 537 CG31988-RA 374..534 382..542 780 99.3 Plus
CG31624-PA 537 CG31624-RA 374..534 382..542 680 96.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG31988-RB 1149 CG31988-RB 390..923 9..542 2595 99.1 Plus
CG31988-RA 1014 CG31988-RA 297..830 9..542 2595 99.1 Plus
CG31624-RC 979 CG31624-RC 87..620 9..542 2445 97.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 21201719..21202252 542..9 2595 99.1 Minus
2L 23513712 2L 21199404..21199937 542..9 2445 97.2 Minus
2L 23513712 2L 19404347..19404402 116..61 190 89.3 Minus
Blast to na_te.dros performed on 2014-11-28 18:41:26 has no hits.

MXO02859.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:09 Download gff for MXO02859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-PA 1..537 9..546 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:14 Download gff for MXO02859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 289..833 1..546 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:33:03 Download gff for MXO02859.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31988-RA 289..833 1..546 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:33:03 Download gff for MXO02859.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 21201716..21202259 1..546 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:14 Download gff for MXO02859.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 21201716..21202259 1..546 97   Minus