MXO02870.5prime Sequence
723 bp (723 high quality bases) assembled on 2007-05-15
> MXO02870.5prime
CAGTCGACATGGCTTTGGCCAACGTGCTGCAGCTAAGCCAGATAGCTGGC
CATGTCATCCTGTTTATCCTGTCGCTGTGCATCGTCGTGCCATTGTTTAT
AAACCTCGACCAATTCTGTGGCCACTGCCTGCTCTTTACAACTGGCAAAT
GGCGGGAGGAGGACGGCATGTTCGATGTCCAGTGGGCTTCCAATGGCTTC
TGCAACTTTCCCCTGATTACCGGGTTCTTCCTGCTAATTATTTCGGTGGT
GCAGATTTATAGATACGCCCGCATGAAGGAGGAGGCCTCGTTTATAGCTC
TGTTCATTGACGTCGTTCTGGGCATTTGGATGCTGGCTATGTCCATTTTG
TCGGCTATTTTCATTACCCTGGGCTTTATTGTCTGGTGCGATTCCATGAC
CGAGAGATTCCCATCCTGTGCCATTTCCGCCGGTCAGAACATTATCCACG
GCGACACGGAAAAAATTAACACCTCCGGATTTTACATTGAAATGGGAACC
ACTCAGTTTGGCGCATGGGGTTCATTCGCAATTTCCGTTGGCATCGCCGT
CATCGCCCTTCTGAAACTGATCGACAACCACCAGGTGCGCAACATCAAGG
TTTCCATGTACTTGGAGCGACAGCGGTTGGTGAATCAGCAGCAGTACGAC
GGCAGGTCGACCCCGCCGATCGTTTCGAACGCATCCTCCGACACGGAACA
GAACAAAGCAAGCTTTCTAGACC
MXO02870.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13603-PA | 702 | CG13603-RA | 1..699 | 9..707 | 3495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:04:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13603-RA | 1046 | CG13603-RA | 85..783 | 9..707 | 3495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:04:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23985856..23986103 | 506..259 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 23985476..23985679 | 707..504 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 23986166..23986310 | 262..118 | 725 | 100 | Minus |
| 3R | 32079331 | 3R | 23986376..23986485 | 118..9 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:04:19 has no hits.
MXO02870.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:23 Download gff for
MXO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13603-PA | 1..702 | 9..708 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:43:35 Download gff for
MXO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13603-RA | 78..788 | 1..715 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:57:58 Download gff for
MXO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13603-RA | 78..788 | 1..715 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:57:58 Download gff for
MXO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23985471..23985676 | 507..715 | 98 | <- | Minus |
| 3R | 23985856..23986099 | 263..506 | 100 | <- | Minus |
| 3R | 23986166..23986309 | 119..262 | 100 | <- | Minus |
| 3R | 23986376..23986491 | 1..118 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:43:35 Download gff for
MXO02870.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19811193..19811398 | 507..715 | 98 | <- | Minus |
| arm_3R | 19811578..19811821 | 263..506 | 100 | <- | Minus |
| arm_3R | 19811888..19812031 | 119..262 | 100 | <- | Minus |
| arm_3R | 19812098..19812213 | 1..118 | 96 | | Minus |
