MXO02877.5prime Sequence
477 bp (477 high quality bases) assembled on 2007-05-15
> MXO02877.5prime
CAGTCGACATGAAATCTATGTTGGTCCACATAGTTCTAGTGATTTTCATA
ATCGCCGAATTCAGTACAGCTGAGACGGACCACGACAAGAACCGACGAGG
TGCCAACATGGGGCTCTATGCCTTCCCGCGCGTTGGTCGCAGCGATCCCA
GTCTGGCCAACAGTCTGCGCGACGGATTAGAGGCCGGAGTCCTCGACGGC
ATTTACGGAGATGCCTCCCAGGAGGATTACAATGAGGCTGATTTCCAAAA
GAAAGCCAGTGGTCTGGTGGCCTTCCCACGCGTTGGCCGCGGTGACGCCG
AGCTGAGGAAGTGGGCCCACCTTCTGGCTCTGCAACAGGTGCTGGACAAG
CGCACGGGACCCAGCGCCTCCTCGGGATTGTGGTTCGGCCCCCGGCTGGG
AAAGCGCAGTGTGGACGCCAAGTCGTTTGCGGACATCTCCAAGGGACAGA
AGGAACTCAACGCAAGCTTTCTAGACC
MXO02877.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15520-PA | 456 | capa-RA | 1..453 | 9..461 | 2240 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Capa-RA | 695 | CG15520-RA | 90..542 | 9..461 | 2250 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 29913144..29913371 | 461..234 | 1125 | 99.6 | Minus |
3R | 32079331 | 3R | 29913441..29913603 | 234..72 | 815 | 100 | Minus |
3R | 32079331 | 3R | 29914194..29914257 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:32:56 has no hits.
MXO02877.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:50 Download gff for
MXO02877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15520-PA | 1..456 | 9..462 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:32:23 Download gff for
MXO02877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
capa-RA | 90..542 | 9..461 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:20 Download gff for
MXO02877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Capa-RA | 90..542 | 9..461 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:20 Download gff for
MXO02877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 29913144..29913370 | 235..461 | 99 | <- | Minus |
3R | 29913441..29913602 | 73..234 | 100 | <- | Minus |
3R | 29914194..29914257 | 9..72 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:32:23 Download gff for
MXO02877.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 25738866..25739092 | 235..461 | 99 | <- | Minus |
arm_3R | 25739163..25739324 | 73..234 | 100 | <- | Minus |
arm_3R | 25739916..25739979 | 9..72 | 100 | | Minus |