MXO02879.5prime Sequence
929 bp (760 high quality bases) assembled on 2007-04-17
> MXO02879.5prime
CAGTCGACATGGGAGACAGTTCAGATGAGGAATATCTGGGCACGGACTGG
CTGGCTTACAGCGAACGCTCCGACTGGGAAGATGTGCAACCGCTCGCCCA
GGACGACGGTCCCAATCCGGTGGTGTCCATTGCTTACAGTCAAAAGTTTC
GCGAGGTCTTCGACTACATGAGGGCCATAATTGCGCGGGGGGAGAAGAGC
CAACGTGCCTTGGACCTAACCACGGACGCACTGCGTCTGAATCCGGCTAA
CTACACGGTCTGGCAATACAGACGCGACGTTCTGCGCGAACTAAAGGCTG
ATCTGTATGCGGAACTGGACTATCTGACCGAGGTGATTGGCCAGAACTCG
AAAAACTACCAGGTTTGGCACCACCGTTTCGTCATCCTCGAGATGCTGAA
CGATCCCAGCAACGAGCTGGAGCTTACTGAGAACGCCCTGGTCAACGATG
GCGATGCCAAGAACTACCACGCCTGGCAACATCGCCAGTGGGCCATTCGC
AGCTTTAATCTCTATGACGATGAACTTAGCTTTGTGGATCGTCTCATTAG
CGAGGATCAGCGCAACAATTCGGCCTGGAACCAGCGCTTCTTTGTGATCA
AGCATTTTGGATTCACGCCGGAGCTGATCCAGCGCGAACTGTCGTACACG
ATGAATCGCATTCGCATCATCAAAAACAACGAGAGTGCCTGGAACTATTT
GGTGGGCGTGATGCGGCAGGGCGACAGTGGAAATGCCCTGCTGAGCAGCT
ACCCGGATGTCGTGGACTTTGTGGAGGAGCTCTACCAGGCTGGCAATCGA
TCGCCCTACCTGCTGGCCTTCCTCATCGATCTCTACCAGGAGCAGGCGCT
CCAACTAAAGGCCAGCGATAGCAATCAACTCGCCCGCAAGGTGTACCGTC
TGTGCGAGGACATGGCCACCAAACACGAT
MXO02879.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2976-PA | 996 | CG2976-RA | 1..921 | 9..929 | 4480 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fnta-RB | 1352 | CG2976-RB | 87..1007 | 9..929 | 4530 | 99.5 | Plus |
| Fnta-RA | 1185 | CG2976-RA | 87..1007 | 9..929 | 4530 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4829559..4829984 | 929..504 | 2085 | 99.3 | Minus |
| 2L | 23513712 | 2L | 4830040..4830400 | 508..148 | 1760 | 99.2 | Minus |
| 2L | 23513712 | 2L | 4830469..4830607 | 147..9 | 695 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:54:42 has no hits.
MXO02879.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:44 Download gff for
MXO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2976-PA | 1..921 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:20 Download gff for
MXO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2976-RA | 82..1007 | 1..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:48 Download gff for
MXO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fnta-RA | 82..1007 | 1..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:48 Download gff for
MXO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4829559..4829979 | 509..929 | 99 | <- | Minus |
| 2L | 4830040..4830400 | 148..508 | 99 | <- | Minus |
| 2L | 4830469..4830611 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:20 Download gff for
MXO02879.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4829559..4829979 | 509..929 | 99 | <- | Minus |
| arm_2L | 4830040..4830400 | 148..508 | 99 | <- | Minus |
| arm_2L | 4830469..4830611 | 1..147 | 97 | | Minus |
