MXO02883.5prime Sequence
915 bp (636 high quality bases) assembled on 2007-05-15
> MXO02883.5prime
CAGTCGACATGGGTTGCGATGGAGGAACTATTCCCAGGCGCGATGAGCTG
GTGCGCGTGAAGCAAAAGCCAGAGCAGAAAGACAAAGATGCGGAGAGGGA
GTTCCGTTGGCGCCACTGCACCTTGACCCAGCAAAGCCTCCAGGAGCCGA
TCGCCATGTGCGGCATGGGTAGGCTCTATTCCAAGCAGAGCGTCATTGAG
CGACTGCTGGAGAAGGAACCGATGCCAGAGACAGCTGCGCACGTGAAGAG
CATGAAGGACATTCGCCAGCTTAATCCCACACCCAATCCCGCCTTCACCG
AGGAGGACAAAACTGAGGGACTGCTGGACACACGACATTCTCCTTACATC
TGCAAGCTGATTGGCCTGGAGATGTCCGGCAAATTTCGCTTTGTGGCCCT
TTGGAGCTGCGGATGCGTTTTATCAGAGCGTGCCTTGAAACAGATCAAAG
GCAGTGTGGCTAGCACTTGTCCGCTGTGCCAGGCTGCCTATAGCGTTGAG
GACGTGGTGGTCCTCAATGGCAACGAGGAGGACATGGAGCTCATGCGGGT
CAAGATGGAAATGCGTGCGGCCAAGCGTAAGTCCTCCAAAAAGGACAAGA
AGAGTGCCAAAAAGGTGGAGGTGAAAGCGGAGCCCGCAGAGGAACAGGAG
CCAGTGGCGTCCACATCCAAGGCTGCAGCCGCAGAGAAGCCCACTACAAG
CACAAAAACCAAGGCGGTGGCGCCGGTCAAACGACTGGGCGCCGTTAATG
CAATGCAGGATCCCGAACTGAAGCGTCTCAAGAGCGACTTCAGCGTGGCC
AAAGACCCGAAGGCCAGCGATGTTTACAAGTCCCTTTTCACCTCCATAAA
ACCGAAAAGGACCAGGAGCGCGCCCACTGGGTCACCTATAATCCATTCTA
CCATGCAAGCTTTCT
MXO02883.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6443-PA | 900 | CG6443-RA | 1..837 | 9..845 | 4160 | 99.8 | Plus |
| CG6443-PA | 900 | CG6443-RA | 837..894 | 844..901 | 290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6443-RA | 1184 | CG6443-RA | 184..1078 | 8..901 | 4435 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10729369..10730196 | 75..901 | 4075 | 99.8 | Plus |
| 2L | 23513712 | 2L | 10729239..10729308 | 8..77 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:34:32 has no hits.
MXO02883.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:13:55 Download gff for
MXO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6443-PA | 1..900 | 9..905 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:29:14 Download gff for
MXO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6443-RA | 184..1081 | 8..904 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:17:35 Download gff for
MXO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6443-RA | 184..1081 | 8..904 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:17:35 Download gff for
MXO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10729239..10729308 | 8..77 | 100 | -> | Plus |
| 2L | 10729372..10730199 | 78..904 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:29:14 Download gff for
MXO02883.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10729239..10729308 | 8..77 | 100 | -> | Plus |
| arm_2L | 10729372..10730199 | 78..904 | 99 | | Plus |
