MXO02887.5prime Sequence
792 bp (746 high quality bases) assembled on 2007-04-17
> MXO02887.5prime
CAGTCGACATGCGCAACTTCGTGATCATATTTAGCCTATCTCTGGCATTT
GGCATCGCCTCCGCCACCGATTATTGCAAAAAGAGCTGCGGAAGCACCAA
GAATCTGGGATGCGACAATAATGGAGCCTGGGCCTCAAGCTGTCCCAGTG
ACGCCACCCTGTTGACCCTCTCCAGCGCTGAGAAGGATGCACTGGTGGCC
AGGACGAACGAGTATCGCAACCACATCGCCGGCGGACTGAATGCCAATCT
GAGTGCCGCCTGTCGAATGGCCACGATCAAGTGGAACGATGAACTGGCTT
ACTTGGCCAGTTTGAACGTGAAAAGTTGTCAAATGAAACACGACGGCTGC
CACAATACGGATGCTTTCGACTGGTCTGGCCAGAATCTGGCCTGGATGGG
CTACTACAATCCGCTAAATGTTACACACTATCTAGAATGGGGCGTCGATA
TGTGGTACGATGAGGCGGTGTACACCAAACAGGCCTACATCGATGCCTAT
CCGTCGAACTACAATGGTCCGGCCATTGGACATTTCACGGTGCTCGTTGC
CGATCGGAATACGGAAGTGGGTTGTGCCGCGGCCACGTACTCCGTGTCCG
GCCAATCGTACAAGGCCTTCCTGCTGGCCTGTAACTATGCGGCCACCAAT
GTTCTGGGCATCAAGATGTACAGTTCCTGCTCCAAGGCGGCCAGCAAGTG
TACCACCGGTACCAATCCCAAGTACAAGTATCTGTGCAGCGCCAAGGAGG
AGTACAACGTANACAACCTCTTCTATGCAAGCTTTCTAGACC
MXO02887.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 06:39:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9538-PA | 771 | Ag5r-RA | 1..768 | 9..776 | 3821 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ag5r-RC | 1760 | CG9538-RC | 342..1109 | 9..776 | 3829 | 99.9 | Plus |
| Ag5r-RB | 1446 | CG9538-RB | 28..795 | 9..776 | 3829 | 99.9 | Plus |
| Ag5r-RA | 1011 | CG9538-RA | 28..795 | 9..776 | 3829 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14785315..14785965 | 776..126 | 3244 | 99.8 | Minus |
| X | 23542271 | X | 14786093..14786210 | 126..9 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:32:48 has no hits.
MXO02887.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:23:45 Download gff for
MXO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9538-PA | 1..771 | 9..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:52 Download gff for
MXO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 20..801 | 1..782 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:22 Download gff for
MXO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ag5r-RA | 20..801 | 1..782 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:22 Download gff for
MXO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14785309..14785965 | 126..782 | 99 | <- | Minus |
| X | 14786094..14786216 | 1..125 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:52 Download gff for
MXO02887.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14679342..14679998 | 126..782 | 99 | <- | Minus |
| arm_X | 14680127..14680249 | 1..125 | 96 | | Minus |
