MXO02894.5prime Sequence
852 bp (704 high quality bases) assembled on 2007-05-15
> MXO02894.5prime
CAGTCGACATGAAGAGTAACGTCACTCAGGGCGGTTACGCCCCACCCGGT
TTCGGATCCGGATTCCAGCCAAATGCTCCGCCCGCCGAAGGATTCGGCTA
CCCACCGCCCACTGGGGGCCACAACGCCCCCTATCCCCCCGCACCCGGTC
ATCCACAGCCGCCGCCGCCCACGAATTACGGGTTTATGCCAGGTCCTCAG
CCAGCCGGATACGCTCCAGTTCCCCAAATGCCGCCGTACGGAGAAGCTCC
GCCCTACGGAGCCGGACAACCACCTTACATGGGTGGTCCAGGTGGTCAGC
CACCTTATGCGGGTGGTCCAGGCGGACAGCCACCTTATGTAGGTGGTCCT
GGTGGACAGCCACACTACGGAGGAGGATCTCCCCCCCCCCAGGCCTTCGG
CGGATATCCTCCCGGACCAGCAGGACCAGGAGGACCACCAAACGCATTCG
GCGGTTATCCACCGGGACAACCACAACAGCCCATTGTCACGCAACCGGGA
ATGGGACCGGGAATGGGTCCAGGGATGGCCCCACAGGGCGGACCAGCAGG
AGACTGGATGAGTATACCTACAGGAATTCCGAACTGTCCGCGCGGATTGG
AGTACCTTACGACTATCGACCAGCTTTTAGTTAAGCAAAAGGTCGAGCTG
CTCGAGGCCTTCACTGGTTTCGAGACCAACAACAAGTTCACGATCAAGAA
CGCCCTGGGTCAGAAGGTCTATTTCGCGGCGGAGGACAACGACTGCTGCA
CGCGCAATTGCTGTGGTCCTGCGCGTCCCTTCGACATGCGTGTCTTTGAT
AACTTCCAGCAGGAAGTGATCCCCATGCACCGCCCGCTGGCCTGCTCCTC
CT
MXO02894.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:14:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32056-PA | 1251 | CG32056-RA | 379..844 | 387..852 | 2255 | 99.3 | Plus |
| CG32056-PA | 1251 | CG32056-RA | 1..369 | 9..377 | 1795 | 99.4 | Plus |
| CG32056-PB | 702 | CG32056-RB | 1..295 | 558..852 | 1400 | 98.9 | Plus |
| CG32056-PC | 999 | CG32056-RC | 300..592 | 560..852 | 1390 | 98.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:09:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scramb1-RA | 2049 | CG32056-RA | 207..1054 | 5..852 | 4090 | 98.8 | Plus |
| scramb1-RB | 1655 | CG32056-RB | 350..658 | 544..852 | 1485 | 98.7 | Plus |
| scramb1-RC | 1640 | CG32056-RC | 353..645 | 560..852 | 1420 | 99 | Plus |
| scramb1-RA | 2049 | CG32056-RA | 472..535 | 300..363 | 185 | 85.9 | Plus |
| scramb1-RA | 2049 | CG32056-RA | 502..565 | 270..333 | 185 | 85.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:09:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 10223867..10224237 | 550..180 | 1780 | 98.7 | Minus |
| 3L | 28110227 | 3L | 10221799..10222105 | 852..546 | 1490 | 99 | Minus |
| 3L | 28110227 | 3L | 10224859..10225034 | 180..5 | 850 | 98.9 | Minus |
| 3L | 28110227 | 3L | 10224054..10224117 | 333..270 | 185 | 85.9 | Minus |
| 3L | 28110227 | 3L | 10224084..10224147 | 363..300 | 185 | 85.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:09:43 has no hits.
MXO02894.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:14:12 Download gff for
MXO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32056-PA | 1..844 | 9..852 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:13 Download gff for
MXO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 205..1054 | 1..852 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:37 Download gff for
MXO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scramb1-RA | 205..1054 | 1..852 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:37 Download gff for
MXO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 10221799..10222098 | 553..852 | 99 | <- | Minus |
| 3L | 10223864..10224237 | 180..552 | 98 | <- | Minus |
| 3L | 10224860..10225036 | 1..179 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:13 Download gff for
MXO02894.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 10214899..10215198 | 553..852 | 99 | <- | Minus |
| arm_3L | 10216964..10217337 | 180..552 | 98 | <- | Minus |
| arm_3L | 10217960..10218136 | 1..179 | 97 | | Minus |
