MXO02895.5prime Sequence
813 bp (604 high quality bases) assembled on 2007-05-15
> MXO02895.5prime
CAGTCGACATGCAGTCTCACAGCAAAAAGCGCGTTTGTTACTACTACGAC
AGCGACATTGGCAACTACTACTATGGCCAGGGTCATCCCATGAAGCCCCA
TCGCATACGCATGACCCACAACCTGCTGCTCAACTATGGGCTCTATCGAA
AAATGGAAATATACCGTCCCCATAAAGCCACTGCCGATGAGATGACCAAG
TTCCACTCGGACGAGTACGTCCGGTTCTTGCAATCCATTCGGCCGGACAA
CATGTCGGAGTACAACAAGCAGATGCAGCGATTCAATGTCGGCGAAGATT
GTCCCGTCTTCGATGGACTATACGAGTTTTGCCAACTCTCCGCCGGAGGA
TCCGTAGCTGCGGCCGTAAAACTGAATAATCAAGCCTCGGAGATTTGCAT
CAATTGGGGCGGTGGGCTGCATCACGCCAAAAAATCGGAGGCCTCGGGCT
TCTGCTACGTCAACGACATTGTTCTGGGAATTCTGGAACTGCTTAAATAC
CATCAGCGTGTTCTCTACATAGATATAGACGTCCATCACGGCGATGGCGT
GGAGGAGGCGTTCTATACCACCGATCGTGTGATGACTGTCAGCTTCCACA
AGTACGGAGAGTATTTCCCGGGCACCGGCGATCTGCGAGACATTGGCGCC
GGCAAGGGAAAGTATTATGCAGTTAATATACCCCTGCGCGATGGCATGAA
TGATGATGCGTACGAGAGCATATTTGTGCCCATTATCAGCAAGGTGATGG
AAACATTCCAGCCGGCAGCCGTGGTGCTGCAGTGTGGCGCCGATTCGCTG
ACTGGCGATCGGT
MXO02895.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:14:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7471-PA | 1566 | Rpd3-RA | 1..805 | 9..813 | 3725 | 98.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rpd3-RA | 2124 | CG7471-RA | 207..1011 | 9..813 | 3845 | 98.5 | Plus |
| Hdac3-RA | 1660 | CG2128-RA | 689..880 | 417..608 | 285 | 77.2 | Plus |
| CG45100-RA | 1660 | CG45100-RA | 689..880 | 417..608 | 285 | 77.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:38:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4627611..4628259 | 165..813 | 3065 | 98.2 | Plus |
| 3L | 28110227 | 3L | 4627420..4627532 | 52..164 | 565 | 100 | Plus |
| 3R | 32079331 | 3R | 5473590..5473781 | 608..417 | 285 | 76.6 | Minus |
| 3L | 28110227 | 3L | 4626940..4626983 | 9..52 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:38:17 has no hits.
MXO02895.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:14:22 Download gff for
MXO02895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7471-PA | 1..805 | 9..813 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:27 Download gff for
MXO02895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpd3-RA | 200..1011 | 1..813 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:59 Download gff for
MXO02895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rpd3-RA | 200..1011 | 1..813 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:59 Download gff for
MXO02895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4626933..4626982 | 1..51 | 92 | -> | Plus |
| 3L | 4627420..4627532 | 52..164 | 100 | -> | Plus |
| 3L | 4627611..4628259 | 165..813 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:27 Download gff for
MXO02895.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4626933..4626982 | 1..51 | 92 | -> | Plus |
| arm_3L | 4627420..4627532 | 52..164 | 100 | -> | Plus |
| arm_3L | 4627611..4628259 | 165..813 | 98 | | Plus |
