MXO02904.5prime Sequence
607 bp (461 high quality bases) assembled on 2007-05-15
> MXO02904.5prime
CAATCGACATGTCCAATAAAATCAACCCGAAGCGCCGCGAACCGACAGCA
GCAGCAGCAGGAGCCGGTGCCACGGGAGTGGCCACCAACACGAGCACCTC
GACCGGATCCTCCAGTGCCGGCAACACGTCCTCGGCCAACACATCCTCGT
CGTCCAGCTCCTCGCTGTCGTCCGCCGGTGGCGGTGATGCGGGCATGTCC
GCCGACTTGACCTCGCTGTTTGAATGCCCCGTGTGCTTTGACTATGTGCT
ACCGCCGATCCTGCAGTGCTCCAGCGGGCACCTGGTGTGCGTGTCCTGTC
GCTCCAAGCTCACCTGCTGCCCCACCTGCCGCGGTCCGCTGGCGAATATC
CGCAACCTGGCGATGGAGAAGGTTGCCTCGAACGTCAAGTTCCCGTGCAA
GCACTCCGGCTACGGATGCACCGCCTCGCTGGTTTACACGGAAAAGACAG
AACACGAGGAGACGTGCGAGTGCCGGCCCTACCTGTGTCCGTGCCCGGGC
GCCAGCTGTAAGTGGCAGGGCCCGCTTGACATACTCATGCACCATCTGAT
GATGTCGCACAAAAGCATCACAACGCTGCAGGGCGAGGACATCGTGTTCC
TGGCCAC
MXO02904.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9949-PA | 945 | sina-RA | 1..599 | 9..607 | 2895 | 99.3 | Plus |
| CG9949-PB | 945 | sina-RB | 1..599 | 9..607 | 2895 | 99.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:41:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sina-RC | 3124 | CG9949-RC | 830..1428 | 9..607 | 2935 | 99.3 | Plus |
| sina-RB | 2482 | CG9949-RB | 188..786 | 9..607 | 2935 | 99.3 | Plus |
| sina-RA | 3191 | CG9949-RA | 897..1495 | 9..607 | 2935 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:41:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16856418..16857016 | 9..607 | 2935 | 99.3 | Plus |
Blast to na_te.dros performed 2014-11-28 18:41:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 613..728 | 121..8 | 133 | 63 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 973..1033 | 41..98 | 126 | 72.1 | Plus |
MXO02904.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:43 Download gff for
MXO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9949-PB | 1..599 | 9..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:17:08 Download gff for
MXO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 890..1495 | 1..607 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:32:57 Download gff for
MXO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sina-RA | 890..1495 | 1..607 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:32:57 Download gff for
MXO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16856411..16857016 | 1..607 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:17:08 Download gff for
MXO02904.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16849511..16850116 | 1..607 | 98 | | Plus |
