MXO02908.5prime Sequence
845 bp (802 high quality bases) assembled on 2007-05-15
> MXO02908.5prime
CAGTCGACATGTTTTGGCCGAGATTTGCGCCCGTTGAGGTTATGGTTGAG
CTGGAGTTCGGCAGCGGTTTTGAGGAGATGCACGAACAGATGTCCGGCTA
CAAGCGGATGCGGCGCGAGCACCAGGCGCACCTGGTCAAACTGGAGGAGA
AGTGCAAGGTGGACATGGAGGCGCACAAGACGGCCCTGGACAAGGAGTAT
GACACGCTGCTCCACAACTTTACGAGGGACCTCGATCGGCTTGAGACGAA
GCATCAGCAGGATGTGGAGAGGCGCGCTAAGCAAACGAGCGCCGCCGAGA
AGAAACTACACAAAGAGATTACGCTAAAGCAGGAGAACGATCGCAAGGTG
TACGACCTGAACCGCAAGAAGGAGTACAAGGCGAACAAGGAGCGCTGGAA
GCGGGAGCTCTCCATGGATGAGTCGACGCCCAAGCGGCAGCGCGATCTTA
CCCTGCAATCGCAGAAGGACAACCTCAAGCAGCACGAGGCGCAGGAGGAG
CAGCGCATGCTCCAGGCCCAGAAGCAGTACATCGAGCTGGAGATGCGCAA
GTTCAAGCGCAAACGGATGATCATGCAGCACGAGCACGAGGATCAGCAGC
TGCGCGACGAGCTCGGAAAGAAGGAGCAGCAACTGCAGCAGGCACACGCC
ATGCTTCTTAAGCACCACGAAAAGACACAGGAGCTGGAGTACCGCCAGCA
GAAGAGCGTGCACCAGTTGCGCGAGGAGCAGATAAACAAGCAACACGATA
CCGAGTTGCATAATCAAAAAGACTACATGGACCGCATCAAGAAGGAGCTG
GTACGCAAGCATGCGGTTGAGCTGAGGCAACAGCCGAAGAGCTTT
MXO02908.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14217-PA | 1479 | Tao-1-RA | 1..836 | 9..844 | 4180 | 100 | Plus |
| CG14217-PE | 3120 | Tao-1-RE | 1705..2477 | 72..844 | 3865 | 100 | Plus |
| CG14217-PD | 3120 | Tao-1-RD | 1705..2477 | 72..844 | 3865 | 100 | Plus |
| CG14217-PB | 1410 | Tao-1-RB | 1..767 | 78..844 | 3835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tao-RG | 2621 | CG14217-RG | 209..1044 | 9..844 | 4180 | 100 | Plus |
| Tao-RA | 2099 | CG14217-RA | 209..1044 | 9..844 | 4180 | 100 | Plus |
| Tao-RI | 4230 | CG14217-RI | 2403..3175 | 72..844 | 3865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19572865..19573230 | 609..244 | 1830 | 100 | Minus |
| X | 23542271 | X | 19573291..19573464 | 245..72 | 870 | 100 | Minus |
| X | 23542271 | X | 19572678..19572800 | 731..609 | 615 | 100 | Minus |
| X | 23542271 | X | 19572501..19572617 | 844..728 | 585 | 100 | Minus |
| X | 23542271 | X | 19573603..19573666 | 72..9 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:08:57 has no hits.
MXO02908.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:04:44 Download gff for
MXO02908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14217-PA | 1..836 | 9..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:34 Download gff for
MXO02908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RA | 172..1013 | 1..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:07 Download gff for
MXO02908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tao-RA | 203..1044 | 1..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:07 Download gff for
MXO02908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19573291..19573464 | 72..245 | 100 | <- | Minus |
| X | 19573604..19573671 | 1..71 | 94 | | Minus |
| X | 19572500..19572613 | 732..845 | 99 | <- | Minus |
| X | 19572678..19572800 | 609..731 | 100 | <- | Minus |
| X | 19572866..19573228 | 246..608 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:34 Download gff for
MXO02908.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19467637..19467704 | 1..71 | 94 | | Minus |
| arm_X | 19466533..19466646 | 732..845 | 99 | <- | Minus |
| arm_X | 19466711..19466833 | 609..731 | 100 | <- | Minus |
| arm_X | 19466899..19467261 | 246..608 | 100 | <- | Minus |
| arm_X | 19467324..19467497 | 72..245 | 100 | <- | Minus |
