Clone MXO02911 Report

Search the DGRC for MXO02911

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:29
Well:11
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptexba-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02911.5prime Sequence

856 bp (767 high quality bases) assembled on 2007-05-15

> MXO02911.5prime
CAGTCGACATGAGTCAAAAAACTGAAAGACCAGTGCTATCGGGTCAACGC
ATCAAGACCAGAAAAAGAGATGAAAGAGAAAAATATGACCCAACGGGATT
CCGTGATGCGGTCATTGCTGGTCTCGAAAAAACTGAAGGCGACCTGGAAC
AAATCTCTAAATATCTAGACAGCGCGGGCAACAAGCTCGACTATCGTCGC
TACGGTGAAGTTCTCTTTGACATATTGATTGCAGGAGGTCTACTAGTGCC
TGGTGGTTCTATATCTCAGGATGGCGAAAAGCCGCGCACAAGCTACTGCA
TCTTCGATGCGCCCGAGAGCATGGAGAGCATGCGCAACCATGAGCAGGTA
TTTGTCAAGCTCATCAGACGGTACAAGTACCTTGAGAAAATGTTCGAAGA
GGAGATGGGAAAGGTTCTATTATTCGTAAAGGGCTTTACTCCTAGTGAAC
GCATCAAGCTTGCGCGTATGACAGCGCTCTGGTTAGTCAACGGTTCTGTA
CCGCCAAATGTTTTACTGGTACTAAACAACGAGCACCTAATCAAGGATGG
CATTGCATTGGAGTTTCTACTAGAGCTGTTCCAGACGTTCAAGCAAGAGA
AGGGCATTGCATATCTGATTCAGGCGCTTAAGAAGGGTGGACTGGAAAGC
AAACTTATGGACTTTTTCCCACCGAACAAACGTACTGAGGAATATTTTAA
ACAAGTTTTTCTTGACAAAGAACTTAACGAGATCGTCAAGCTACATAAGG
CTCAGGCTAGCCAGGAGGCGAAGCGTGAGTTGCAGCAGGCGCTCATCGAT
GATATCAACGATGAGAAGCCATATAATGAGATAACCTCAGACATTAGGGA
CTTCTC

MXO02911.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG2922-PG 1269 eIF-5C-RG 1..848 9..856 4215 99.8 Plus
CG2922-PC 1269 eIF-5C-RC 1..848 9..856 4215 99.8 Plus
CG2922-PF 1269 eIF-5C-RF 1..848 9..856 4215 99.8 Plus
CG2922-PD 1269 eIF-5C-RD 1..848 9..856 4215 99.8 Plus
CG2922-PB 1269 eIF-5C-RB 1..848 9..856 4215 99.8 Plus
CG2922-PE 1269 eIF-5C-RE 1..848 9..856 4215 99.8 Plus
CG2922-PA 1269 eIF-5C-RA 1..848 9..856 4215 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
kra-RE 1701 CG2922-RE 221..1068 9..856 4225 99.9 Plus
kra-RB 1847 CG2922-RB 367..1214 9..856 4225 99.9 Plus
kra-RD 2026 CG2922-RD 546..1393 9..856 4225 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5599116..5599353 246..9 1190 100 Minus
3R 32079331 3R 5597312..5597515 856..653 1005 99.5 Minus
3R 32079331 3R 5597772..5597939 652..485 840 100 Minus
3R 32079331 3R 5598204..5598345 486..345 710 100 Minus
3R 32079331 3R 5598942..5599046 349..245 525 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:14:32 has no hits.

MXO02911.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:07:59 Download gff for MXO02911.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2922-PA 1..848 9..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:03 Download gff for MXO02911.5prime
Subject Subject Range Query Range Percent Splice Strand
exba-RD 546..1393 9..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:36 Download gff for MXO02911.5prime
Subject Subject Range Query Range Percent Splice Strand
kra-RD 546..1393 9..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:36 Download gff for MXO02911.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5597312..5597515 653..856 99 <- Minus
3R 5597772..5597937 487..652 100 <- Minus
3R 5598204..5598342 348..486 100 <- Minus
3R 5598944..5599044 247..347 100 <- Minus
3R 5599116..5599353 9..246 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:03 Download gff for MXO02911.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1423034..1423237 653..856 99 <- Minus
arm_3R 1423494..1423659 487..652 100 <- Minus
arm_3R 1423926..1424064 348..486 100 <- Minus
arm_3R 1424666..1424766 247..347 100 <- Minus
arm_3R 1424838..1425075 9..246 100   Minus