MXO02912.5prime Sequence
944 bp (827 high quality bases) assembled on 2007-05-15
> MXO02912.5prime
CAGTCGACATGTGCGCGTGCCTAATCGCTAAGATAATTCTATGTAGTTTT
CGTTTGTATACAATAAGTGCCTTTTATATGTTAACGACGATGTCAGCCAG
CAGCAATACAAACAGCCTGATCGAGAAGGAGATCGACGACGAGGACATGC
TTTCGCCGATCAAGTCCAACAACCTGGTGGTGCGGGTCAACCAGGACACG
GACGACAACCTGCAGGCGCTATTCGACAGCGTCCTGAATCCGGGTGACGC
CAAGCGCCCGCTGCAGCTGCCCCTGCGCATGCGGAAGCTGCCCAACTCCT
TCTTCACGCCCCCGGCGCCCTCGCACTCGCGGGCCAACAGCGCCGACTCC
ACCTACGACGCGGGCTCCCAGTCGAGCATCAACATCGGGAACAAGGCGTC
CATCGTCCAGCAGCCAGATGGCCAGTCGCCCATCGCCGCCATCCCCCAGC
TCCAGATTCAGCCGTCTCCCCAGCACAGCCGCCTGGCGATACATCACTCC
CGAGCCCGCAGCAGCCCCGCCTCGCTGCAGCAGAACTACAATGTGCGCGC
CCGGAGCGACGCAGCAGCAGCCAACAATCCGAATGCCAATCCGAGCAGCC
AACAGCAGCCCGCTGGGCCCACTTTCCCAGAGAACAGTGCCCAAGAGTTC
CCCAGCGGCGCCCCGGCCAGCTCGGCCATTGATCTGGACGCCATGAACAC
CTGCATGTCGCAGGACATTCCCATGTCCATGCAGACAGTGCACAAGAAGC
AGCGCTCCTACGACGTCATCAGCCCCATTCAGTTGAACCGCCAACTAGGC
GCCTTGCCGCCGGGATGGGAGCAAGCCAAGACCAATGATGGCCAGATCTA
CTACTTGAATCATACTACAAAATCTACGCAGTGGGAGGATCCCAGAATCC
AATATCGCCAGCAGCAGCAAATCTTGATGGGCCGAGCGAATAAA
MXO02912.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4005-PB | 1101 | CG4005-RB | 1..922 | 9..930 | 4610 | 100 | Plus |
| CG4005-PA | 1101 | CG4005-RA | 1..922 | 9..930 | 4610 | 100 | Plus |
| CG4005-PC | 1257 | CG4005-RC | 1..922 | 9..930 | 4610 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:09:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yki-RF | 1525 | CG4005-RF | 171..1105 | 9..944 | 4655 | 99.9 | Plus |
| yki-RD | 1369 | CG4005-RD | 171..1105 | 9..944 | 4655 | 99.9 | Plus |
| yki-RG | 1460 | CG4005-RG | 106..1040 | 9..944 | 4655 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:09:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24067465..24068315 | 859..9 | 4255 | 100 | Minus |
| 2R | 25286936 | 2R | 24067171..24067254 | 944..860 | 375 | 98.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:09:29 has no hits.
MXO02912.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:03 Download gff for
MXO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4005-PC | 1..932 | 9..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:19 Download gff for
MXO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..1037 | 1..941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:50 Download gff for
MXO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yki-RG | 101..1037 | 1..941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:50 Download gff for
MXO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24067174..24067254 | 860..941 | 98 | <- | Minus |
| 2R | 24067465..24068320 | 1..859 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:19 Download gff for
MXO02912.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19954697..19954777 | 860..941 | 98 | <- | Minus |
| arm_2R | 19954988..19955843 | 1..859 | 99 | | Minus |
