MXO02913.5prime Sequence
827 bp (731 high quality bases) assembled on 2007-05-15
> MXO02913.5prime
CAGTCGACATGGGTGACAACGAACCCATGGCGCTCCAGCTGATGGCCGAG
GCGGAGAAGAAGTTGACCCAGCAGAAGGGCTTTCTGGGATCGCTGTTCGG
AGGGTCCAACAAGGTGGAGGACGCCATCGAGTGCTACCAGCGGGCGGGCA
ACATGTTTAAGATGTCCAAAAACTGGACAAAGGCTGGGGAGTGCTTCTGC
GAGGCGGCAACTCTACACGCGCGGGCTGGAAGTCGTCACGATGCCGGAAC
CTGCTACGTAGACGCTTCCAACTGCTACAAGAAGGTGGACGTGGAGAGCG
CCGTCAACTGCCTGATGAAGTCCATCGACATCTACACGGATATGGGCCGC
TTTACGATGGCTGCCAAACATCACCAAAGCATCGCCGAGATGTACGAAAG
TGATCCCAATAATCTGGCCAAGTCTATTCAGCACTATGAGCAGGCGGCTG
ATTACTTCAAGGGTGAAGAGTCGGTCAGTTCGGCCAACAAGTGCATGTTG
AAGGTGGCCCAGTACGCCGCCCAACTGGAGGATTACGAGAAAGCAATATC
CATATACGAGCAGGTGGCCGCCTCCTCGCTGGAGAGCTCTCTGCTCAAGT
ACAGTGCCAAGGAGTACTTCTTCAGGGCCGCTCTATGCCATCTCAGCGTG
GACCTCCTGAACGCCCAGCATGCCATCGAAAAGTATGCGCAGCAGTACCC
AGCATTCCAGGACTCCAGGGAGTTCAAGCTCATCGAGGTGTTGTGCGAGA
ATCTAGAGGAACAGAACATCGAGGGATTCACAGAGGCCGTCAAGGACTAC
AACAGCATCTCCCGGGTGGATCAGTGG
MXO02913.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6625-PA | 879 | Snap-RA | 21..819 | 29..827 | 3920 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| alphaSnap-RA | 2070 | CG6625-RA | 157..980 | 4..827 | 4030 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:09:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20314982..20315306 | 416..740 | 1610 | 99.7 | Plus |
| 3L | 28110227 | 3L | 20314607..20314924 | 100..417 | 1590 | 100 | Plus |
| 3L | 28110227 | 3L | 20313788..20313884 | 4..100 | 440 | 96.9 | Plus |
| 3L | 28110227 | 3L | 20315396..20315487 | 736..827 | 430 | 97.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:09:04 has no hits.
MXO02913.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:05:06 Download gff for
MXO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6625-PA | 1..819 | 9..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:40 Download gff for
MXO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Snap-RA | 155..980 | 1..827 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:43:13 Download gff for
MXO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| alphaSnap-RA | 155..980 | 1..827 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:43:13 Download gff for
MXO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20314983..20315303 | 417..737 | 99 | -> | Plus |
| 3L | 20315398..20315487 | 738..827 | 97 | | Plus |
| 3L | 20313786..20313884 | 1..100 | 95 | -> | Plus |
| 3L | 20314608..20314923 | 101..416 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:40 Download gff for
MXO02913.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20306886..20306984 | 1..100 | 95 | -> | Plus |
| arm_3L | 20307708..20308023 | 101..416 | 100 | -> | Plus |
| arm_3L | 20308083..20308403 | 417..737 | 99 | -> | Plus |
| arm_3L | 20308498..20308587 | 738..827 | 97 | | Plus |
