MXO02916.5prime Sequence
720 bp (634 high quality bases) assembled on 2007-05-15
> MXO02916.5prime
CAGTCGACATGCGCACCGGCTCGCCCAGCAGCAGCGGCTCCCAGTCGGAG
GAGGGCAGCAGTTCCTCAGATCACCAGCAGCCGCAGCAGGAAGCCCAGGA
GCAGGAGCAACAGCTGCACACTCCCACGCATGCACATGCCGCGGTGCCAG
CTGCCACATCGGAGGAGATCCTGGCGGAGTACGGCAGCAACCTGAAGCTA
CTCGAGTGCAATTCCCAGGTGGCCGAACTGCTGACCATATTGCGCGACAA
GAACACCACGCGCAGTGACTTCAAGTTCTATGCCGACCGTCTCATCCGGC
TGGTCATCGAGGAGTCGCTCAACCAACTGCCCTACACCCATTGCGATGTG
GAGACGCCCACCGGTGCGATTTACGAGGGACTGAAGTATCGCTCCGGCAA
CTGCGGCGTGTCCATCATCCGATCGGGAGAGGCCATGGAGCAGGGACTGC
GTGACTGCTGTCGCTCCATTCGCATTGGAAAGATCCTGGTCGAGTCCGAT
GCCAATACGCATGAGGCCCGCGTGGTTTATGCCCGCTTTCCCGATGACAT
CGGCAGCGGGCAGGTGCTACTCATGTACCCCATCATGTCCACGGGCAACA
CTGTGCTGCAGGCGGTGAATGTGCTGCGGGAACACGGCGTACCCGAGAGC
TGCATCATCCTGTCCAATCTCTTCTGCACACCCATTGCCGCTCGGACCGT
AGTGAATGCCTTCCCCAAGC
MXO02916.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5537-PA | 786 | CG5537-RA | 1..712 | 9..720 | 3535 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5537-RC | 1191 | CG5537-RC | 106..818 | 8..720 | 3550 | 99.9 | Plus |
| CG5537-RB | 1045 | CG5537-RB | 106..818 | 8..720 | 3550 | 99.9 | Plus |
| CG5537-RA | 1106 | CG5537-RA | 106..818 | 8..720 | 3550 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5811386..5811855 | 251..720 | 2335 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5811078..5811321 | 8..251 | 1220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:26:33 has no hits.
MXO02916.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:08 Download gff for
MXO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5537-PA | 1..712 | 9..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:32:44 Download gff for
MXO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5537-RA | 97..818 | 1..720 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:22:50 Download gff for
MXO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5537-RA | 97..818 | 1..720 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:22:50 Download gff for
MXO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5811069..5811320 | 1..250 | 98 | -> | Plus |
| 3L | 5811386..5811855 | 251..720 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:32:44 Download gff for
MXO02916.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5804169..5804420 | 1..250 | 98 | -> | Plus |
| arm_3L | 5804486..5804955 | 251..720 | 99 | | Plus |
