MXO02917.5prime Sequence
714 bp (640 high quality bases) assembled on 2007-05-15
> MXO02917.5prime
CAGTCGACATGGCTTCCTTGCGCGTCGTCAATAGATTAGTGTGCCGCGGT
TTTGTGGCTCTTACGTTGCTGCTGGTCTTCTTCAACGAGTTTATAGTTTA
CTACATGGCCCAGTCCAGTTGGCAGCCAATCGATTGCAAACTAGATAATT
GCACGCGCCTGCTGCTTATTGCTGATCCCCAGATACTGGGAAACTCCTAC
GATCGATCTTCGCACAGTCCTTTAGCCAGGTACGATTCGGATAGATACCT
GGCGAAGACTTTCGAGCGAGCTCTTGCCTTTACACAGCCTCACATCATAG
TGTTCCTGGGCGATCTGTTGGACGAAGGCAACATTGCCACGGCTCAAGAG
TACAAGCAGTACGTTCAGCGGTTCAGACGAATTTATCAGAATAAGAACTA
CAAAAAACGCGTCCATGTGCCGGGTGACAATGATATTGGCGGCGAGAATG
GCGACTACATATCCAACTCGAACCAAAGACGCTTTGAGAACGAATTCATG
AGTGAAGACCTCTTTGACTATGACAATCGATTACGCTTCTTCAAGATAAA
CCGCATGCTATTGGACTTTAGCAACCCGGATAGGGATAACAATGCGGATC
GTCTAAGAATTGGCGTATCCCATGCCCCGCTGCTCATTGGCGGAGGACCC
CTGTTGAGAGCCATCATCAGCGACTTGGATCCACATATCATTTTCTCANG
ACACTGGCATGAAT
MXO02917.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8889-PA | 1068 | CG8889-RA | 1..706 | 9..714 | 3511 | 99.8 | Plus |
| CG8889-PB | 1074 | CG8889-RB | 31..712 | 33..714 | 3391 | 99.8 | Plus |
| CG8889-PC | 579 | CG8889-RC | 1..217 | 498..714 | 1066 | 99.5 | Plus |
| CG8889-PB | 1074 | CG8889-RB | 1..27 | 9..35 | 135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mppe-RA | 1757 | CG8889-RA | 460..1165 | 9..714 | 3519 | 99.9 | Plus |
| Mppe-RB | 1763 | CG8889-RB | 460..1171 | 9..714 | 3449 | 99 | Plus |
| Mppe-RD | 1784 | CG8889-RD | 460..858 | 9..407 | 1995 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12026266..12026572 | 714..408 | 1524 | 99.7 | Minus |
| 2R | 25286936 | 2R | 12026723..12026988 | 407..142 | 1330 | 100 | Minus |
| 2R | 25286936 | 2R | 12027038..12027153 | 148..33 | 565 | 99.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:21:57 has no hits.
MXO02917.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:18 Download gff for
MXO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8889-PA | 1..706 | 9..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:20:21 Download gff for
MXO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1165 | 9..714 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:09:17 Download gff for
MXO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mppe-RA | 460..1165 | 9..714 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:09:17 Download gff for
MXO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12026266..12026572 | 408..714 | 99 | <- | Minus |
| 2R | 12026723..12026985 | 145..407 | 100 | <- | Minus |
| 2R | 12027042..12027151 | 35..144 | 100 | <- | Minus |
| 2R | 12027223..12027248 | 9..34 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:20:21 Download gff for
MXO02917.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7913771..7914077 | 408..714 | 99 | <- | Minus |
| arm_2R | 7914547..7914656 | 35..144 | 100 | <- | Minus |
| arm_2R | 7914728..7914753 | 9..34 | 100 | | Minus |
| arm_2R | 7914228..7914490 | 145..407 | 100 | <- | Minus |
