MXO02918.5prime Sequence
768 bp (613 high quality bases) assembled on 2007-05-15
> MXO02918.5prime
CAGTCGACATGAATCTATCATTCGCTGGCTGCGGATTCCTGGGCATCTAC
CACGTCGGAGTGGCCGTCTGCTTCAAGAAGTATGCACCGCATCTGTTGCT
GGAGAAGATCGGAGGCGCTTCGGCCGGTTCCCTGGCCGCCTGCTGTCTCC
TCTGCGATTTGCCATTGGGCAGCATGACTTCGGACTTCTTCAGGGTGGTG
AACGAAGCTCGTCGCTACTCCCTGGGTCCCTTCAATCCCTCCTTCAACAT
CCAGACCTGTCTGCTGGAGGGTCTACAGAAGCATCTACCACACGATGCTC
ACAAGCGGGTGAATGGACGACTGCTCATTTCGCTTACCCGCGTGTACGAT
GGCAAGAACGTGATCATCTCGGAGTTTGAGTCACGGGAAGAGGTCCTGCA
GGCGCTGTTGTGTGCGTGCTTCATACCCGGATTCTCCGGCATCTTGCCGC
CCAGATTCCGTGGCGTTCGCTACATGGATGGTGCCTTCTCGGACAATCTG
CCCATTCTGGACGAGAACACCATTACGGTCAGTCCGTTCTGCGGCGAGAG
TGATATTTGCCCGAGGGATCAGAGCTCGCAGCTCTTCCATCTGAATTGGG
CCAACACCAGCATCGAGATCTCCAGACAGAACATCAATCGCTTCGTGCGC
ATCCTTTTTCCGCCGCGTCCCGAGTTTCTGTCCAAGTTCTGCCAGCAGGG
ATTCGATGATGCCCTGCAATTCCTGCATCGCAACAATCTGATCAACTGTC
GACGCTGCGTGGCGGTTC
MXO02918.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5295-PA | 1524 | CG5295-RA | 1..760 | 9..768 | 3725 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| bmm-RB | 2301 | CG5295-RB | 334..1094 | 8..768 | 3760 | 99.6 | Plus |
| bmm-RA | 2437 | CG5295-RA | 334..1094 | 8..768 | 3760 | 99.6 | Plus |
| dob-RA | 1855 | CG5560-RA | 511..769 | 315..573 | 290 | 75.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14778423..14779023 | 768..168 | 2960 | 99.5 | Minus |
| 3L | 28110227 | 3L | 14785918..14786079 | 169..8 | 810 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:31:37 has no hits.
MXO02918.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:08:28 Download gff for
MXO02918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5295-PA | 1..760 | 9..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:31:30 Download gff for
MXO02918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 329..1094 | 1..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:38 Download gff for
MXO02918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| bmm-RA | 329..1094 | 1..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:38 Download gff for
MXO02918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14778423..14779022 | 169..768 | 99 | <- | Minus |
| 3L | 14785919..14786084 | 1..168 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:31:30 Download gff for
MXO02918.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14771523..14772122 | 169..768 | 99 | <- | Minus |
| arm_3L | 14779019..14779184 | 1..168 | 97 | | Minus |
