MXO02920.5prime Sequence
627 bp (627 high quality bases) assembled on 2007-05-15
> MXO02920.5prime
CAGTCGACATGGCACGCGGCTTCGATCATCTATTCAAGTTGCTAATAATC
GGCGATAGCGGCGTGGGCAAGTCGTCGCTGCTCATCCGGTTCTCGGACGA
CACATTCTCAGGCAGTTACATCACCACCATCGGCGTGGACTTTAAGATCC
GCACCGTGGACATCGAGGGCATGCGCGTAAAGCTGCAGATCTGGGACACG
GCCGGGCAGGAGCGCTTCCGGACAATCACCAGCACCTACTACCGCGGCAC
CCACGGCGTCATTGTCGTCTACGACGTCACGAACGGCGAATCCTTTGCGA
ACGTCCGCCGCTGGCTGGAGGAGATCCAGAATAACTGCGATGTGGTTAAA
AAAGTATTAGTGGGCAACAAGAACGACGATCCGGACAGGAAGGTGGTCAT
TACCGAAGACGCGCAGCGGTTTGCGAAACAAATGGACATCGAGCTATTCG
AGACATCTGCCAAAGACAACATAAACGTGGAGAACATGTTCTTGTCGATT
ACGCGACAGGTGCTCGATCACAAGCTGCGCACCTCCCCCAACGAGCAGCA
GAAGGACACGCTCCATCTGAAGCCCAATCCCAAGGGCAGCAAGGGTGGGA
AGTGCTGCAGGGCAAGCTTTCTAGACC
MXO02920.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:05:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9575-PA | 606 | Rab35-RA | 1..603 | 9..611 | 3015 | 100 | Plus |
| CG14791-PC | 693 | Rab27-RC | 196..233 | 183..220 | 140 | 94.7 | Plus |
| CG14791-PB | 711 | Rab27-RB | 214..251 | 183..220 | 140 | 94.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:36:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rab35-RB | 2024 | CG9575-RB | 926..1528 | 9..611 | 3015 | 100 | Plus |
| Rab35-RD | 3348 | CG9575-RD | 926..1528 | 9..611 | 3015 | 100 | Plus |
| Rab35-RA | 2635 | CG9575-RA | 926..1528 | 9..611 | 3015 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:36:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20157970..20158270 | 360..60 | 1505 | 100 | Minus |
| X | 23542271 | X | 20157586..20157838 | 611..359 | 1265 | 100 | Minus |
| X | 23542271 | X | 20158895..20158947 | 61..9 | 265 | 100 | Minus |
| X | 23542271 | X | 12461504..12461623 | 284..165 | 195 | 77.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:36:01 has no hits.
MXO02920.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:05:16 Download gff for
MXO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9575-PA | 1..606 | 9..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:45 Download gff for
MXO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 917..1539 | 1..622 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:47 Download gff for
MXO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rab35-RA | 917..1539 | 1..622 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:47 Download gff for
MXO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20157575..20157836 | 361..622 | 98 | <- | Minus |
| X | 20157970..20158269 | 61..360 | 100 | <- | Minus |
| X | 20158896..20158956 | 1..60 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:45 Download gff for
MXO02920.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20051608..20051869 | 361..622 | 98 | <- | Minus |
| arm_X | 20052003..20052302 | 61..360 | 100 | <- | Minus |
| arm_X | 20052929..20052989 | 1..60 | 93 | | Minus |
