MXO02921.5prime Sequence
905 bp (860 high quality bases) assembled on 2007-05-15
> MXO02921.5prime
CAGTCGACATGGGCAACTCGCAACCGCGTAATGCAAGCAGAAGCAGAAGG
ACATCCCAGTGGCCACAAGGCGCAGCGGAACTAGGCGCCTCAGCCAGCGA
TCACCACTACCACCAGGAGGAGCTGTATCAGGAGCAGCAGCAGCAGCAAC
AACAGCCGCAACAGGAGCAACCGAGCAGCAGGAGAATCCAGTTCCAGGCC
CACACCAACCAGCCAACACAGTCGCATCCTCCGGGCGACGAGGAACAGCC
TGTACAATCACAGCAGCAACAGCTTTCCACCTGGAGTCTTGGCAGCCTTA
GCGGAGGACGACTCAACTGGAGCTTCTCCGGTGCCCGCAACTCATTTCGT
CATCGAAACAAGGCCACGCGAAAGAGCTTGACCTCACTTCATGGCTCTCG
TCGTGGCAAGACTCAGTGGCACCGACCTCTGACCAACTCAATCTTCAACT
CGCACTTTAAGGAGACCAGCAAGAACGATCTGTACCGTATCGATCATTTG
GTGGCCAAGGGAGCCTTTGGCGTGGTCTTCAAGGTGTCCAGCAAGAGTGA
CATTAGTCAGTGCTACGCCCTGAAAGTGCTAAAGAAATCAAAGCTCATCG
AAGACAACAGTGTACGGCAGATAAAGGACGAGGCGGACATTCAGAAGGTT
TGCGGCCATCATCCGTTTATCGTGAAGCAAATAGATCTGTGGCAAAACCG
CCACAACCTCCATATTCTATCGGAGTACGTACCCAACGGCGAGTTGTTCT
CAAAAATAACTCACTTCTCCATTGATCTGGTTCGTTTATACATTGGCGAG
ATAGCACTTGCCTTGGATTTTCTCCACAACGCTGGGATTATATATCGTGA
TGCGAAGCCGGAGAACATCCTGCTAACTGAACAGTTTCACATAAAGCTAA
CCGAC
MXO02921.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:05:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7001-PA | 1452 | Pk17E-RA | 1..897 | 9..905 | 4485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pk17E-RA | 2129 | CG7001-RA | 369..1265 | 9..905 | 4485 | 100 | Plus |
| Pk17E-RC | 2123 | CG7001-RC | 369..1259 | 9..905 | 4385 | 99.3 | Plus |
| Pk17E-RB | 1651 | CG7001-RB | 145..787 | 263..905 | 3215 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18788832..18789089 | 9..266 | 1290 | 100 | Plus |
| X | 23542271 | X | 18790675..18790893 | 375..593 | 1095 | 100 | Plus |
| X | 23542271 | X | 18790956..18791081 | 592..717 | 630 | 100 | Plus |
| X | 23542271 | X | 18790503..18790615 | 264..376 | 565 | 100 | Plus |
| X | 23542271 | X | 18791146..18791244 | 718..816 | 495 | 100 | Plus |
| X | 23542271 | X | 18791300..18791389 | 816..905 | 450 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 19:56:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6887 | 139..296 | 202 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6996 | 62..271 | 198 | 60.6 | Plus |
MXO02921.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-15 16:05:20 Download gff for
MXO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7001-PA | 1..897 | 9..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:46:27 Download gff for
MXO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1265 | 9..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:31:32 Download gff for
MXO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pk17E-RA | 369..1265 | 9..905 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:31:32 Download gff for
MXO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18790677..18790893 | 377..593 | 100 | -> | Plus |
| X | 18790958..18791081 | 594..717 | 100 | -> | Plus |
| X | 18791146..18791244 | 718..816 | 100 | -> | Plus |
| X | 18791301..18791389 | 817..905 | 100 | | Plus |
| X | 18788832..18789089 | 9..266 | 100 | -> | Plus |
| X | 18790506..18790615 | 267..376 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:46:27 Download gff for
MXO02921.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18682865..18683122 | 9..266 | 100 | -> | Plus |
| arm_X | 18684539..18684648 | 267..376 | 100 | -> | Plus |
| arm_X | 18684710..18684926 | 377..593 | 100 | -> | Plus |
| arm_X | 18684991..18685114 | 594..717 | 100 | -> | Plus |
| arm_X | 18685179..18685277 | 718..816 | 100 | -> | Plus |
| arm_X | 18685334..18685422 | 817..905 | 100 | | Plus |
